 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Spipo5G0004100 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 156aa MW: 18291.8 Da PI: 6.5129 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Spipo5G0004100 | genome | MIPS/IBIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 32.4 | 1.5e-10 | 40 | 91 | 2 | 53 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53
+k+ ++t+e Le++F+ +++++ ++++eLA++l+L rq+ vW + +R+
Spipo5G0004100 40 KKKLRLTREHSAMLERVFRTQSTITNTMKRELADRLNLHPRQIEVWNKLKRM 91
788899****************************************777776 PP
|
| 2 | HD-ZIP_I/II | 64.1 | 3.4e-21 | 40 | 124 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
+kk+rl++e +++LE+ F+++++++++ K ela +L+l+prq++vW k+k++E++ye +k+++++l+ en++L++e +++r+ ++
Spipo5G0004100 40 KKKLRLTREHSAMLERVFRTQSTITNTMKRELADRLNLHPRQIEVW-------NKLKRMEVNYELMKKCFERLSCENQQLKEELKKMRSMIT 124
59********************************************.......589*******************************98775 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 156 aa
Download sequence Send
to blast |
MDQGREKDQC LWRSSLSTAS EDEDEDIVNA EPSEAGGENK KKLRLTREHS AMLERVFRTQ 60
STITNTMKRE LADRLNLHPR QIEVWNKLKR MEVNYELMKK CFERLSCENQ QLKEELKKMR 120
SMITSSVCPS CQRLREELHR MDECSLSTDI HVDNT*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
