PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Spipo5G0004000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

HD-ZIP

Protein Properties

Length: 149aa MW: 17184.7 Da PI: 10.5171

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo5G0004000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.8	3.2e-12	85	112	29	56
HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56 +++eLA+ l+L rqV vWFqNrRa+ k Spipo5G0004000 85 QKQELADLLNLRPRQVEVWFQNRRARTK 112 79************************98 PP
2	HD-ZIP_I/II	79.8	4.2e-26	83	146	26	89
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 + +K+ela L+l+prqv+vWFqnrRARtk+kq E d+e+Lk+ +++l+een++L+++ +eLr+ Spipo5G0004000 83 TMQKQELADLLNLRPRQVEVWFQNRRARTKLKQKELDCEFLKKYCESLREENRQLREQLQELRS 146 469***********************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.0024	77	118	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-10	84	116	IPR009057	Homeodomain-like
Pfam	PF00046	1.2E-9	85	112	IPR001356	Homeobox domain
CDD	cd00086	3.19E-7	85	115	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.1E-11	85	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.293	85	114	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	89	112	IPR017970	Homeobox, conserved site
SMART	SM00340	2.0E-4	114	148	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MGGQEPFDTR LALGVGGDAD VLVARKRKRP MQFHILLPSH TAEEPGRSWR EDQGPGRLML 60 RGDAGDKSTD ADGTGTRKKL RLTMQKQELA DLLNLRPRQV EVWFQNRRAR TKLKQKELDC 120 EFLKKYCESL REENRQLREQ LQELRSVK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	81	TRKKLRL
2	106	114	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026660422.1	2e-30	homeobox-leucine zipper protein HAT9-like
Swissprot	P46604	5e-27	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A443N9U4	6e-33	A0A443N9U4_9MAGN; Homeobox domain-containing protein
STRING	XP_009592889.1	3e-28	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-22	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Spipo5G0004000

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]