PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0113200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 289aa    MW: 31783 Da    PI: 6.4393
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0113200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-1089132855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er RR+++++ f  L  llP++     +K +K++i+ +A++ Ik L+
  Spipo4G0113200  89 TERERRKKMRNMFGSLHALLPQL----PTKADKSTIVDEAIKTIKTLE 132
                     6*********************6....39****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.58281131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.66E-1384146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1385144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.35E-1086136No hitNo description
PfamPF000106.4E-889132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-589137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSQGGGDHDI FPWDEKTWVF LESDNSGGLD GRPGEKPAGE SGSNNLTEVV TLSAQKRSRN  60
GWKKGKDVAL ESENAGAAGE PDHEIHIWTE RERRKKMRNM FGSLHALLPQ LPTKADKSTI  120
VDEAIKTIKT LEASLKRLQK QKMERIRGVV LDSPLPVTAH QWQGTGESSR EPFLADQGKS  180
WPSAVSSELR FPHCFQTWSS PNVVVSVTGA DAHINICAVT KPGLIAAIIY ALEKHHLEVL  240
SAHVSCDYFR SMFMIHAQAN GAPDALPETL PLEELFKSAV EEIMPWIS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106376.13e-91transcription factor bHLH95
TrEMBLM0TYN75e-97M0TYN7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P08780_0019e-98(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-53bHLH family protein