PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0111500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 297aa    MW: 31892.4 Da    PI: 5.0229
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0111500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.51.1e-16219264348
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                     + ++++r++kNRe+A rsR+RK+a+i++Le+ ++ Le+eN +L++e
  Spipo4G0111500 219 SQQKQKRMIKNRESAARSRERKQAYIQQLETLAARLEEENATLREE 264
                     5689****************************************77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.6E-8217276IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.852219264IPR004827Basic-leucine zipper domain
PfamPF001705.1E-14220264IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.75E-10221265No hitNo description
CDDcd147071.34E-17221267No hitNo description
Gene3DG3DSA:1.20.5.1706.0E-14222264No hitNo description
PROSITE patternPS000360224239IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MASASSAGSD VARQSSLYSV GRLAGLSGDR RGSNAGSTNV EDLLRNFYAE SPAGDAAMGD  60
ENSPYVGVAR AVQDGAGSGG SGKEVTLSQQ ERLSAPRVAS RRTAEEVWEE ISRDRKVDVG  120
AERVYKEEFE NITLEDFLAR AGAVTVDDSP SAPVLLPPQV EGAMLGFAAD ASMADRYAQQ  180
NQQVLLADGQ FSGFGNGADS GGVGRGKRKL LADTVDRASQ QKQKRMIKNR ESAARSRERK  240
QAYIQQLETL AARLEEENAT LREEQLMENL IPVVEKERPP PPPPPPRLRR TCSSLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1Z2H45e-92A0A1D1Z2H4_9ARAE; G-box-binding factor 4 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26653786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.11e-28bZIP family protein