PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0089600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 136aa    MW: 14772.9 Da    PI: 10.0082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0089600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.0001651881254
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    R dri ++ + L++l+ +      +K + a++L+++ +YI+ L
  Spipo4G0089600 51 RKDRIGKRVAALQQLVSPF-----GKTDTASVLQETADYINFL 88
                    7788889999999999998.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.9443988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-54493No hitNo description
SuperFamilySSF474592.62E-1044101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00144594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-75097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MTTEVAEQKR RSDGFLGCEG GRFSSLGCSA ASGKKLKKNE LCYKNLLAGE RKDRIGKRVA  60
ALQQLVSPFG KTDTASVLQE TADYINFLHA QLQESDRRSL RARGLCLVPL PCALRLARSN  120
GADIWAPNMT NSRDG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029118435.17e-35transcription factor bHLH153 isoform X2
SwissprotQ7XJU24e-28BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A1D1Y8T69e-47A0A1D1Y8T6_9ARAE; Transcription factor bHLH113
STRINGXP_008791781.12e-33(Phoenix dactylifera)
STRINGGSMUA_Achr3P16850_0012e-33(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5272812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-30bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]