PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0081600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family FAR1
Protein Properties Length: 702aa    MW: 79374.3 Da    PI: 6.2312
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0081600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.98.2e-24108199190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY +YA+++GF+vr s+ ++s+r+++i++r+fvC+keg+  +++kk  ++kerr+r + r gC+a+++v ++  g+w+v+kl ++H+H+++
  Spipo4G0081600 108 SFYFNYAQSLGFRVRASRFRTSRRDESIIMRRFVCYKEGFYLKREKKmaDTKERRKRGSIREGCQAMFEVVRKGPGRWVVAKLFKDHSHAFT 199
                     59**************************************988888877999*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-21108199IPR004330FAR1 DNA binding domain
PfamPF105513.3E-22298390IPR018289MULE transposase domain
PROSITE profilePS5096611.078582618IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-8591617IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-9593620IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MEFGSPSYDG EMLQFDDQRL GEEEDDGNGE EESGEDGEDG LLHEEEVQRY VELKVEEVDQ  60
PTGSPLAFPN VGWEGGGEGP AAGAGFGVEQ QHEPHLGMEF DSLESASSFY FNYAQSLGFR  120
VRASRFRTSR RDESIIMRRF VCYKEGFYLK REKKMADTKE RRKRGSIREG CQAMFEVVRK  180
GPGRWVVAKL FKDHSHAFTT AAVREHKPRK KKVEPVDLPA EAVTQIERGS CGDDPRRQDY  240
WGGGGEAFNL LEYLKRMQAK NPGFFYSLQV DEQSNLVTNV LWADARARAA YGYFGDAVAL  300
DTTYRKSRRM MPFISFTGVN HHLQPVIFAC GIIFEESEPS FSWLLETFSV AMRGRAPLSL  360
VTEPDENLRA AVSRVFPTAR HRFCKRRILQ RAKEELPQLS STPAPWRAFK AEMRRCIDES  420
ETVEGFESCW GLLMSKYNLG GSSWIQSLYE LREHWAAAFL KDAFFAEMSP AQRSETMHEF  480
FVRNFETRAS LRDFLSKFDR AMAGQFEKEV QADYASLSSS PVLKTSSELE KQAAEMYTKT  540
IFAIFQEELL QSSSALPAAK SDDGVNWEYD VVHSSEDPGK VYRVDLCYPE KRASCSCRKF  600
DFSGILCRHI LSVFSSLHIS KLPEDYFLRR WTRAAKSGPP LLESNSAHLP GDRRKAFSCL  660
CHEIFKFAEE GATSSAAYAA AKDALRNAFA EVVAAKKGFT G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930350.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1D1XZB50.0A0A1D1XZB5_9ARAE; Protein FAR1-RELATED SEQUENCE 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-128FAR1-related sequence 5