PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo4G0044300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | bHLH | ||||||||
Protein Properties | Length: 188aa MW: 21059.8 Da PI: 12.4195 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.8 | 0.00011 | 98 | 134 | 13 | 54 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ s+ eeLr+llP a ++++ + L ++v+YI++L Spipo4G0044300 98 LRDVGSRAEELRRLLPGA-----GRMEFGSLLDETVNYIHHL 134 566777889********9.....9*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.067 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-4 | 95 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.26E-7 | 95 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MHREASAGNP NPSRHLQALH FLRALARINK LRARKSPPSP RATARGGRRI ARAAYAAMAL 60 AAGPRKAWSR AILLGLRRNS ITKPFPVKKK ILKPRRKLRD VGSRAEELRR LLPGAGRMEF 120 GSLLDETVNY IHHLTAQVGL MQKIADSLFY QLGSCRTTML SRWYVWIAPI VGANRFVRRF 180 DFSAVAI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 98 | KPRRKLR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D1ZJ05 | 1e-29 | A0A1D1ZJ05_9ARAE; Transcription factor bHLH87 |
Link Out ? help Back to Top | |
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Phytozome | Spipo4G0044300 |