PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0018300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 226aa    MW: 25237.7 Da    PI: 6.2899
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0018300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.11.4e-111346538
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeL 38
                    k  rr+++NReAAr+sR++Kka+i++Le    +L
  Spipo4G0018300 13 KMLRRLAQNREAARKSRLKKKAYIQQLESTRTKL 46
                    6789***********************9755555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0026780IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.8181157IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-71353No hitNo description
PfamPF001706.5E-91347IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-81455No hitNo description
PROSITE patternPS0003601631IPR004827Basic-leucine zipper domain
PfamPF141442.5E-3298167IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
EGYMLGTRPL NYKMLRRLAQ NREAARKSRL KKKAYIQQLE STRTKLAQIE SELENGIYRG  60
GCSGDSAYGL SATMDSGLAA FEMEYGHWVE EQNKYRCELR AALQAHVSEI ELRILVESVM  120
SHYDELFRIK AAAAKADIFY LMSGMWKTSA ERCFLWIGGF RPSELLKQSS QQAEDALSQG  180
IDRLQQTLAE SLTSDPLGAG STPPVDNLTE QISAAVGKLE ALVNFV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905949.11e-107transcription factor TGA4 isoform X2
SwissprotQ392378e-87TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A2H3YN911e-104A0A2H3YN91_PHODC; transcription factor TGAL6-like isoform X5
STRINGXP_008801018.11e-104(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.66e-90bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]