PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo3G0103500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 107aa MW: 12285 Da PI: 10.2367 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 167 | 1.1e-51 | 2 | 103 | 1 | 101 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspessl 94 +g+gr+ptw+ErEnnkrRERrRRa+aaki++GLRa G+y+lpk++DnneVlkALcreAGw+ve+DGttyr+ s p+ ++ +a ++s + s+ Spipo3G0103500 2 TGGGRMPTWRERENNKRRERRRRAVAAKIFSGLRALGDYRLPKHCDNNEVLKALCREAGWIVEEDGTTYRQVSLPMiSRLRSAEMDCRRSDCCSV 96 689*************************************************************************9999999999999999999 PP DUF822 95 qsslkss 101 qs+++ s Spipo3G0103500 97 QSVPSIS 103 9655544 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 6.3E-48 | 3 | 104 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 107 aa Download sequence Send to blast |
MTGGGRMPTW RERENNKRRE RRRRAVAAKI FSGLRALGDY RLPKHCDNNE VLKALCREAG 60 WIVEEDGTTY RQVSLPMISR LRSAEMDCRR SDCCSVQSVP SISAVRD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 2e-25 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 2e-25 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 2e-25 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 2e-25 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009352718.1 | 6e-37 | PREDICTED: BES1/BZR1 homolog protein 4-like | ||||
Swissprot | Q9S7F3 | 9e-29 | BEH1_ARATH; BES1/BZR1 homolog protein 1 | ||||
TrEMBL | A0A444FK93 | 2e-36 | A0A444FK93_ENSVE; Uncharacterized protein | ||||
STRING | XP_009352718.1 | 2e-36 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5474 | 34 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50750.1 | 2e-30 | BES1/BZR1 homolog 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo3G0103500 |