PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo3G0093200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 275aa MW: 30589.9 Da PI: 10.8667

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo3G0093200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.4e-08	108	154	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h +rEr+RR+r+ ++++ L ++ ++ +K +K +i+ A Y++ L Spipo3G0093200 108 MRHMMRERQRRERLSQSYADLYHMIHPQ-----PKTDKNSIVLAAAAYVRGL 154 6799*******************997.....6************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.26E-12	104	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.011	105	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-5	108	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-10	109	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.5E-5	111	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MAAAPPTMED LSFWSDAIPW GMFALEEESA AAPTGEELLR LESASPAPPP PPPVQGSAFR 60 SYDRERRRVG GGGGGGGRVN IHRRVMEYLR RMPVQKREKR EAECSRSMRH MMRERQRRER 120 LSQSYADLYH MIHPQPKTDK NSIVLAAAAY VRGLKRTVGA LQRQHQQLRS AVAASGGERA 180 EGATIRFRVG NPSSPVDSMI AALKRLKSMD VKAKSIRSVA GDRELSAVVD VQTEMTTNEV 240 ETAVQRALVE VEWKLRNRPK VNEDVRRGPP DVSR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	119	RQRRER

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008777863.1	2e-60	transcription factor BHLH148-like
Swissprot	Q75KV9	2e-42	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	A0A2H3X3S2	4e-59	A0A2H3X3S2_PHODC; transcription factor BHLH148-like
STRING	XP_008777863.1	7e-60	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	8e-19	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo3G0093200

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]