PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0092900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 323aa    MW: 35620.4 Da    PI: 10.1429
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0092900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.2e-31256312358
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                     D+y+WrKYGqK++kgs++pr+YY+C+   gCp++k+vers edp+++++tYegeH h
  Spipo3G0092900 256 DEYSWRKYGQKPIKGSPHPRGYYKCSGVrGCPARKHVERSLEDPSMLIVTYEGEHSH 312
                     9*************************887***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-7207250IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.8E-32242313IPR003657WRKY domain
PROSITE profilePS5081129.562249312IPR003657WRKY domain
SuperFamilySSF1182902.48E-26251313IPR003657WRKY domain
SMARTSM007745.2E-37254314IPR003657WRKY domain
PfamPF031062.4E-26256312IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEEIEEAIRA SVESSDRLLN LFSSSSGEVL DRNLIAEASG EAVAKWGSVV RQLNKGCGHG  60
RVRFQRPSQC LLLQTTPTWK PLQLLRRTLQ KKPGGELGAP HADNHRLFHG NLALQVDPTP  120
IGALPRDAEF APCSPFQYPL HQPDKYQGSG INLNFESSGC DPIVSSTRSF ISSQIVNGSL  180
AGMNRQGFGL LDSLPSSQSL GLLQSQKKRC WSRGEEGNWR CAISARSQYS KRRKLRVRRS  240
IKVPAVSNSH AGIPPDEYSW RKYGQKPIKG SPHPRGYYKC SGVRGCPARK HVERSLEDPS  300
MLIVTYEGEH SHGRVLTQSI PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-192563121671WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18591RRTLQKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805954.12e-93protein WRKY1-like isoform X1
TrEMBLA0A2H3YYT45e-92A0A2H3YYT4_PHODC; protein WRKY1-like isoform X1
STRINGXP_008805954.19e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.17e-67WRKY DNA-binding protein 39