PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0038700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HB-other
Protein Properties Length: 1210aa    MW: 131449 Da    PI: 8.9683
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0038700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.61.6e-0673129157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++R  ++++ ++ +++ F  +  +s++e +e+++ +g+t +qV+ +F  +R + +k
  Spipo3G0038700  73 KKPRDLLNPKAIKYMQSIFSIKDSISKKETREISALCGVTITQVREFFASQRSRVRK 129
                     799**************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.37870130IPR001356Homeobox domain
SMARTSM003895.6E-472134IPR001356Homeobox domain
CDDcd000862.65E-573129No hitNo description
SuperFamilySSF466891.5E-673134IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-673138IPR009057Homeodomain-like
Gene3DG3DSA:3.40.1000.102.1E-4010131036IPR016123Mog1/PsbP, alpha/beta/alpha sandwich
SuperFamilySSF557241.1E-2410171035IPR016123Mog1/PsbP, alpha/beta/alpha sandwich
SuperFamilySSF557241.1E-2410681206IPR016123Mog1/PsbP, alpha/beta/alpha sandwich
Gene3DG3DSA:3.40.1000.102.1E-4010691206IPR016123Mog1/PsbP, alpha/beta/alpha sandwich
PfamPF017892.8E-2310761205IPR002683PsbP family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0015979Biological Processphotosynthesis
GO:0005634Cellular Componentnucleus
GO:0009654Cellular Componentphotosystem II oxygen evolving complex
GO:0019898Cellular Componentextrinsic component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1210 aa     Download sequence    Send to blast
MELVPMNLED GLEELQTFKS KECLDRFLDA QRDLFRSQVD QLQKIVIHQC KVTGVNPLSQ  60
EMAAGALSIN IGKKPRDLLN PKAIKYMQSI FSIKDSISKK ETREISALCG VTITQVREFF  120
ASQRSRVRKL VRLSREKAIK SSASDEISIG YPSNSGLAPP ATEQACEPSV VPISVEGCAQ  180
VLVNGIQQLD APQQLNHVSV DSADNRSTKE GLPCAPQEET IPGLDADDKN FLEHIFSLMK  240
KEETFSGQVK LIEWILQIHT SAVLLWFLTK GGVLILATWL SQAALEEQTT VLCHLPLHKA  300
LPAQMSAILQ TVNKLRFYRT SDISNKARVL LSRWSKLFIR SQAMKRPLSV KYPSGSQKEM  360
IRKQRISEIL SDGFWLSKVD LPEDILALSY EGSDSNRKLD SKQALKLLPA TCNESSKKQA  420
RSVSCAKTKE RRKVLLVEHP DHRNPGRSVP VARVVPTKSS RPMSSDDIQK AKMHAIFMQR  480
KYGNTDTSSD GQNTINPKVP NAPPPDKIPK LSESEKDEDE KAVVSATEVS HSKLEELADS  540
KPLTSAALTS AVDSKPPASI SLPTIADSNP STSFGLANSV DAKPSASVSS PSLVDSKPLN  600
LISLPSLVDS KPSTSVGLSS VADSKPSTSG SLSSLVNSGP STVTGEPSLE KLRRACIQWQ  660
TPPEEYGLSL SGSHQWNVLN VLSFLLDGWR SENGVADACR CNYAIVILSR STERLVPVPV  720
LVLVLVLDQV IRISELWSIG NGESSKEMDV QTARIRREQE ALYPKTVALL DVLKQSSGGL  780
AGILSAAAGA LPAHTAEPAT SLPSPTPPSE RTRMEWQPEP APLVAKNPPF LQHRPGPAQA  840
RAMLQGRMGD PNVLVDRSEL EAWSPERSSG GGGFRPAGGF PDARRASEYA WGGDVLPERR  900
PRLHQLPGPR DHRPRAAVGG DWTWRVVMAM GGPAAAGRIR WVAQRTVRAS GEGKSPAEEF  960
SPLAAVFRRR LLAGTATASV VALGANFAGV TSSLLGLYPD FGRRLKLDAL YPVGGYSRCL  1020
DTGEGFEFTY PADWVGDQTL LYRAAERAEL QRQLDPSSPL VDAVPRRRRR SSGVSEPAVA  1080
FGPPGSNGEL NVSVIVSSVP ADFSIEAFGG PKEVGEAVLR TITGARGGAA TVTAALVDSA  1140
VRRDPARDVN YYRLEFRVES PSFRRHNVAV CCAYGGKLFT LNAQAPESAW PTFRDEFNFM  1200
ADSFNLTFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2xb3_A6e-14101512067164PSBP PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80433034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-123HB-other family protein