PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo3G0017700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bZIP

Protein Properties

Length: 323aa MW: 35059.2 Da PI: 9.2234

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo3G0017700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.7	9.2e-17	252	295	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eNk+Lkk Spipo3G0017700 252 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENKMLKKH 295 79*************************************99965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-11	248	304	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-15	248	296	No hit	No description
PROSITE profile	PS50217	11.197	250	294	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.9E-15	252	295	IPR004827	Basic-leucine zipper domain
CDD	cd14707	4.45E-23	252	294	No hit	No description
SuperFamily	SSF57959	4.88E-11	252	297	No hit	No description
PROSITE pattern	PS00036	0	255	270	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MGIQSMVTHG AGGGGGGKQL HPQSETLSRE GSLYGLTLND VQNQLGEPLS SMNLDELLRN 60 VLPPGGEQTL AVDLQSTGQF GSSSVLQSQG SVGLDRALRK KTVDEVWLDI QQGQGKGDGE 120 TRLDPERQAT LGEMTLEDFL VKAGVVVEDT EKKRTSNLSS TGSTDRPAGT SGYSKGAHWL 180 QAYHQQQPQQ SVMPMYAAGH SAPPPPITIQ EPGYSDPQLT ISSPTMGAFS DTQTPGSKRG 240 PSDDVGGKTV ERRQKRMIKN RESAARSRAR KQAYTNELEN KVSRLEEENK MLKKHRDLEK 300 ILHSMPRPEP KILLRRTSSA TF*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922938.1	1e-110	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_010922939.1	1e-110	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-74	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A1D1YFM9	1e-129	A0A1D1YFM9_9ARAE; ABSCISIC ACID-INSENSITIVE 5-like protein 2
STRING	XP_008792462.1	1e-108	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2707	38	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-71	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Spipo3G0017700

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]