PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

WOX

Protein Properties

Length: 263aa MW: 28470.8 Da PI: 8.2505

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo3G0014200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.2	1.9e-15	28	88	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p +++ ++ k l ++ +++V++WFqNrR + ++ Spipo3G0014200 28 RTRWTPKPEQILILESIFNSgMVNPPKDDTVRIRKLLerfgSVGDANVFYWFQNRRSRSRR 88 89***************99***********************************997 PP
2	Wus_type_Homeobox	105.8	2.7e-34	27	90	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +rtRWtP+peQi iLe++++sG+++P+k+ + ri++ Le++G ++d+NVfyWFQNr++R+r++q Spipo3G0014200 27 VRTRWTPKPEQILILESIFNSGMVNPPKDDTVRIRKLLERFGSVGDANVFYWFQNRRSRSRRRQ 90 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.9E-8	8	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.01E-13	24	94	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.418	24	89	IPR001356	Homeobox domain
SMART	SM00389	1.0E-5	26	93	IPR001356	Homeobox domain
Pfam	PF00046	5.1E-13	28	88	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MEDQARKAKS RPHGSAGDVV FPAAERVRTR WTPKPEQILI LESIFNSGMV NPPKDDTVRI 60 RKLLERFGSV GDANVFYWFQ NRRSRSRRRQ RQLQAGIAAE PRALSATDGG GGGGAARCDV 120 TLPGAFANSS TNSSFGAFVP SSTSDVSIGT NFSPDIFADD SAEDLFSISR QMGFTETIDQ 180 SRRYAPPPAR HHGASSFHYQ SGLITVFING IPQEVPSGPF DTKKVFGQDA MLLHSSGELV 240 PMNDCGTLFS ALHNGESYIL LS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269\|PubMed:26307379, ECO:0000269\|PubMed:29740464}.
UniProt	Transcription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250\|UniProtKB:Q0D3I7}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00330	DAP	Transfer from AT3G03660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022719652.1	2e-73	WUSCHEL-related homeobox 11-like
Swissprot	B8B644	5e-57	WOX11_ORYSI; WUSCHEL-related homeobox 11
Swissprot	Q0D3I7	5e-57	WOX11_ORYSJ; WUSCHEL-related homeobox 11
TrEMBL	A0A1D1XY95	8e-81	A0A1D1XY95_9ARAE; WUSCHEL-related homeobox 11 (Fragment)
STRING	XP_008781307.1	1e-71	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	6e-53	WUSCHEL related homeobox 11

Link Out ? help Back to Top
Phytozome	Spipo3G0014200

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhao Y, et al. The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling. Plant Cell, 2015. 27(9): p. 2469-83 [PMID:26307379] Zhang T, et al. The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice. Front Plant Sci, 2018. 9: p. 523 [PMID:29740464]