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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Spipo3G0006000 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family |
WRKY |
Protein Properties |
Length: 362aa MW: 39291.8 Da PI: 6.3512 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Spipo3G0006000 | genome | MIPS/IBIS | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 83 | 2.9e-26 | 192 | 252 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
dDgy+WrKYGqK++ s+fprsYYrCt++ gC++kk+v+r ++dp + eitY g+H ++
Spipo3G0006000 192 DDGYTWRKYGQKNILHSRFPRSYYRCTHKnfyGCEAKKQVQRLDDDPYTYEITYCGDHSCR 252
8***************************99999*************************986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 362 aa
Download sequence Send
to blast |
MEEILPLIVR SCEKARELGE NLPRVASQAH LLLDTCKEIA ADFSNAVDKL ASAQALDGEV 60 PGSGQRGEED SFGSEYMDTM DLLYGRGNGE GRPEILRAPP ERGVGPQGLP ELGLEIPVTH 120 GLRGELGVAS GEVDWIPGHH RRSPATTGLS SFSSTIAIAS VQRSTRKSRK DGSRTWTKRV 180 PAVEGNLDAL PDDGYTWRKY GQKNILHSRF PRSYYRCTHK NFYGCEAKKQ VQRLDDDPYT 240 YEITYCGDHS CRTSPTPYPI INDAGAEGRE VTSAAQAQYP SAVSISAMVG SWFPANVDAR 300 YLESSHARVH AGESSGAAHR KLSPLPGGRD VDCSVADLAD VMFNSRGGCI LDAFFSSKQQ 360 N*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
6ir8_A | 2e-21 | 192 | 252 | 9 | 69 | OsWRKY45 |