PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo30G0003900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family FAR1
Protein Properties Length: 868aa    MW: 97393.7 Da    PI: 7.469
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo30G0003900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.62.8e-25117206290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      +Y+eYAk++GF++r ++ + s+r+g +  r+fvCsk+g+r + +kk +++++ +r+etr+gC a +k+k+  dgk+++++l+  HnH+la
  Spipo30G0003900 117 CYSEYAKKMGFTIRWDNRTLSRRTGVTLARRFVCSKQGRRGDGQKKrHSQAKYHREETRCGCLAYMKIKLAGDGKYRIIELNATHNHPLA 206
                      7***************************************99888846777789**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-22117206IPR004330FAR1 DNA binding domain
PfamPF105519.1E-30455549IPR018289MULE transposase domain
PROSITE profilePS509669.557735769IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-4736763IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MEGEEQLHDD PHEGNDAPAQ VDSAGETASE APDDLSAEKA DHGSLPTSNA FVRDNHNQAQ  60
LAVINEGSVN LPPADQKSFV RPAAPVNELD NRERNGNAQM DPVIGMAFET ENAAYDCYSE  120
YAKKMGFTIR WDNRTLSRRT GVTLARRFVC SKQGRRGDGQ KKRHSQAKYH REETRCGCLA  180
YMKIKLAGDG KYRIIELNAT HNHPLASQVP FNYTLANLVL YNHHPLANQV PGIHPVPIQI  240
ANLRSLPNQV PNIRPVSIQV PSIHHPLPPA TQVPSVHPPA AAQASGIRPR PNQVPYNHPV  300
AVFVPIGPQQ VQSHHLAGKS PGNQHAGHVV IMQRVPGAQG SASGKTKRKR KAAVSGAAAD  360
DDDKLEGVSP DVDPQITELE GLGILPADAR NYLPVKRTNP MQKSDVDSLL EYFRSKQARS  420
SSFFYSFQLD LDEKITNVFW MDGRMKTDYA RFGDVLCFDT TYRMNDYGRP LALFVGVNHH  480
KQMVVFGAAL IYDETAYSFR WVFRSFLEAV SGKRPATLLT DESAAILSAA ASEFRGTPHR  540
LCVWHLYQNA TKNLAKVFTG SKDFDDDFGR CIYDHEVEAD FVQGWNAMLE KYNLVENSWL  600
RHRFRERERW APAHGQAVFC ADIHSAQHRE RMNRELRRYL SSARDMESFL QGFDRFLDDR  660
RSKELEASSK MTKSSPYAPP VSIIQQAARV YTAAAFDMFM AEYVAGLECL VRERKFDGSA  720
QILTVEDGRG HKHAVKVNLE EETLSCSCSK FDRAGILCGH VLTCITKKLR SIPDRYILRR  780
WTRCAGNVSP SSDPTVAADV DDQRDLLSWR YGSLVHDFVQ LSVRAAEDEE IYSCALKHKE  840
AMSEEMEKLF KEKTSSLSYH LFGEHVW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1ZJM30.0A0A1D1ZJM3_9ARAE; Protein FAR1-RELATED SEQUENCE 5 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.18e-80FAR1-related sequence 7