PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo2G0120600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | G2-like | ||||||||
Protein Properties | Length: 378aa MW: 40529.2 Da PI: 6.9627 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.8 | 3.9e-31 | 244 | 300 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse.kAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rFv+a++qLGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Spipo2G0120600 244 KPRRCWSPELHRRFVNALQQLGGAQgSATPKQIRELMKVDGLTNDEVKSHLQKYRLH 300 79*********************8748****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.216 | 241 | 302 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-29 | 242 | 303 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.24E-18 | 242 | 303 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.4E-26 | 244 | 300 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-7 | 246 | 298 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MGPAVRPELA LDLGPPSSGG FVPQREAAPG EGRAAKLEEY VRRLEEERRK IEVFRRELPL 60 CMLILNDTIE GVKEELAGCR DGGGGGRPAL EEFMPVNAKL EEAEGGVRDE KDFRDKVNWM 120 SSAQLWSDNY SANTSSTTST TVASSSNSQK KGSERAAEDR SGGGGGGAFL PFKEMAGKEK 180 AAAVPLPPPD LSLLSPATKA SSSGEHQRSG GSISLTRVSS RGTGMASPAG NEQPPPSHQA 240 APRKPRRCWS PELHRRFVNA LQQLGGAQGS ATPKQIRELM KVDGLTNDEV KSHLQKYRLH 300 TRRLPSSSSP EKHPMMVLGG LWAPPENFPL LKQATGSPQG PLHLANAGED SGEEEDGRSE 360 SYSWKGHLQR PAGEETD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792589.1 | 1e-113 | myb family transcription factor EFM | ||||
TrEMBL | A0A1D1YB93 | 1e-134 | A0A1D1YB93_9ARAE; Two-component response regulator ARR18 | ||||
STRING | XP_008792589.1 | 1e-113 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1817 | 37 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 3e-48 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo2G0120600 |