![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
Spipo2G0118800 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family |
ERF |
Protein Properties |
Length: 188aa MW: 20478.2 Da PI: 11.0946 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Spipo2G0118800 | genome | MIPS/IBIS | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Spo&pid=Spipo2G0118800) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 67 | 3.7e-21 | 38 | 88 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s ykG r+++ +grW+AeIrdp++ kr++lg+++t eeAa+a++aa++k++g
Spipo2G0118800 38 SIYKGLRRRP-WGRWAAEIRDPRK---GKRIWLGTYDTQEEAAAAYDAAARKIRG 88
57********.**********954...4*************************98 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 188 aa
Download sequence Send
to blast |
MAIASTSSPA ASLDVHEKNS GEVKLGGGEG RKKRKKKSIY KGLRRRPWGR WAAEIRDPRK 60 GKRIWLGTYD TQEEAAAAYD AAARKIRGSK AKLNFIYGGA GETPATPTKR SPQAAAQNFL 120 EMDTTREGRE IRGGNGDGPL PGLWDPMEIL SLTFDSWSRP SSLFDRRLPG SARARKSFSS 180 LKISIAS*
|
3D Structure ? help Back to Top |
![Structure](draw_protein_structure.php?sp=Spo&pid=Spipo2G0118800) |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5wx9_A | 3e-19 | 40 | 95 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Nucleic Localization
Signal ? help
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![NLS](draw_nls.php?sp=Spo&pid=Spipo2G0118800) |
No. |
Start |
End |
Sequence |
1 | 30 | 36 | RKKRKKK |
2 | 30 | 45 | RKKRKKKSIYKGLRRR |
3 | 31 | 35 | KKRKK |
4 | 32 | 46 | KRKKKSIYKGLRRRP |