PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0018600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 686aa    MW: 74912.2 Da    PI: 6.9576
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0018600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-201970556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  Spipo2G0018600 19 HRHTPRQIQALEAMFKECPHPDEKQRMHLSRELGLEPRQIKFWFQNRRTQMK 70
                    689**********************************************998 PP
2START163.21.9e-512144323206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     a +a+ el+++++aeep+W+ks     e +n++ + ++f+ +++       + ea+ras v   +++ lv  l+d++ +W e ++    ka+t+e
  Spipo2G0018600 214 ASSAMSELIRLVQAEEPLWTKSEsgdrEVLNSESYDRIFAGARNqprdpdLRQEASRASCVAMTTAVSLVDMLMDSS-KWMELFPtivsKAKTIE 307
                     57899******************99999999999999998777799****9**************************.9*999999999****** PP

                     EECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  84 vissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                     v++sg     g l lm+ elq+lsp+v+ Rdf f+Ry+rq  + +w+i+dvS  ++++     ++ R+ +lpSg++i+++ ng+sk+twvehv++
  Spipo2G0018600 308 VLTSGiggrsGSLLLMYGELQVLSPVVApRDFFFLRYCRQIDQSTWAIADVSRANPSP-----GSPRCWKLPSGCVIQDMFNGYSKITWVEHVEV 397
                     ***************************99*********************87655555.....556***************************** PP

                     -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ++r p h+l+r lv +g+a+ga++w+atl+r+ce+
  Spipo2G0018600 398 EERFPiHQLYRGLVMKGVAFGAQRWTATLRRSCER 432
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.72E-20873IPR009057Homeodomain-like
PROSITE profilePS5007117.7341272IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-221279IPR009057Homeodomain-like
SMARTSM003897.6E-201376IPR001356Homeobox domain
CDDcd000867.28E-201473No hitNo description
PfamPF000464.8E-181970IPR001356Homeobox domain
PROSITE patternPS0002704770IPR017970Homeobox, conserved site
PROSITE profilePS5084848.911203435IPR002913START domain
SuperFamilySSF559611.98E-32205433No hitNo description
CDDcd088758.31E-101207431No hitNo description
SMARTSM002341.4E-39212432IPR002913START domain
PfamPF018523.9E-44215432IPR002913START domain
Gene3DG3DSA:3.30.530.206.7E-8260432IPR023393START-like domain
SuperFamilySSF559617.76E-23457677No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MDSGDDLDVP ASQRKKRFHR HTPRQIQALE AMFKECPHPD EKQRMHLSRE LGLEPRQIKF  60
WFQNRRTQMK AQNERADNSS LRAENDRIRC ENIAMKEALR RVVCPTCSGP PDPEDSFFDE  120
EKLRLENARL KDELYRISSI ASKNLGSPIP HLPRAHRIPI SSLSLSVGGH GVPPVRAPSL  180
DIDLLSGSSP SGPPRSFPSA TISEEERSLM ADAASSAMSE LIRLVQAEEP LWTKSESGDR  240
EVLNSESYDR IFAGARNQPR DPDLRQEASR ASCVAMTTAV SLVDMLMDSS KWMELFPTIV  300
SKAKTIEVLT SGIGGRSGSL LLMYGELQVL SPVVAPRDFF FLRYCRQIDQ STWAIADVSR  360
ANPSPGSPRC WKLPSGCVIQ DMFNGYSKIT WVEHVEVEER FPIHQLYRGL VMKGVAFGAQ  420
RWTATLRRSC ERCSACSMTH GGDSGRAVLL GALSGDGKRS MMKLSQRMVS NFCASMGAGD  480
GHRWTTTLSG PDDVGVRVAV HRSVDPGQPN GVVLSATTSV WLPVPPEIVF GFLSNEQTRP  540
QWDVLSNGNS VQEVAHISSG QDPRNCISLL RGFNASESTM LILQESCTSP SGALVVYAPI  600
DIPAINVVMS GEDPSRVPLL PSGFAIISDE GEVSGGNGSL VTVAFQILVS SLPSAKLNME  660
SVGTVNNLIG TTVQQIKAAL NCPTV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789232.10.0homeobox-leucine zipper protein ROC8-like
RefseqXP_019704584.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A1D1Y0W30.0A0A1D1Y0W3_9ARAE; Homeobox-leucine zipper protein ROC8
STRINGXP_008789231.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.10.0homeodomain GLABROUS 12