PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo29G0013700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 407aa    MW: 42327.1 Da    PI: 5.1891
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo29G0013700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.71.6e-10230287562
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l  ++   a l +e
  Spipo29G0013700 230 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLYQRDTAGLSTE 287
                      9******************************************999998887777666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.9E-15226290IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.576228291IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.2E-10230281No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-8230296No hitNo description
PfamPF001702.2E-9230287IPR004827Basic-leucine zipper domain
CDDcd147039.38E-26231282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MQARTPDPPY PKADLSPGPP NSNGIARSVA NPVPSLTDVP PRSPPAGGAA APAVPPGFGN  60
PSAGLSPSST RGPHHRRAQS ELAFRISEEL DLGSGDPLSS GFDEIGSEDD LFCTYMDVEK  120
MGCREEECGS GSLGNGSWGD RAEAGSRMSL QPGGTEVGQG DNAVRAGAVS VALTASTVPR  180
PKHRYSNSVD GSVLFSSALT KAEGPFGEVA EAKKAMPPDK LAELAAIDPK RAKRILANRQ  240
SAARSKERKA RYISELERKV QTLQTEATTL SAQLTLYQRD TAGLSTENAE LKMQLQAMEQ  300
QAQLRDALNE ALKLEVERLK IATGEPLGSG EGFGAQPEPF GSSGFFALSE QQQQQQALRR  360
PPPGPTQFPG GAAAAAGLQG LMGGPPQAPV KSEGSPISAS ESSSSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921141.21e-110transcription factor RF2b
SwissprotQ6S4P42e-90RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A1D1XJK31e-127A0A1D1XJK3_9ARAE; Transcription factor RF2b (Fragment)
STRINGXP_008808308.11e-108(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26833683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.19e-77bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]