PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo29G0004400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | bZIP | ||||||||
Protein Properties | Length: 716aa MW: 76693.9 Da PI: 7.3562 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.4 | 2.8e-12 | 213 | 274 | 1 | 62 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e e+kr r+++NRe+A+ sRqRKk ++eeLeekv ++ + ++L +++ + e a+l+++ Spipo29G0004400 213 EDEDKRRARLMRNRESAQLSRQRKKHYVEELEEKVRSMHSTITELNRKVSFIMAENATLRQQ 274 6799*********************************************9999999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-16 | 213 | 277 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.4E-10 | 213 | 275 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.634 | 215 | 275 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.8E-16 | 217 | 275 | No hit | No description |
SuperFamily | SSF57959 | 6.19E-12 | 217 | 275 | No hit | No description |
CDD | cd14704 | 3.31E-21 | 218 | 269 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MAEAAVIDPV PCERRDENEA FEANFAGGFD PLQFPDIPAD MTLSAGFMAD LDFDADLDFE 60 GDLDFSVADL LDIPEVDDDL LDGQAEGGAA PFSSSVSDCK GGSGMSSSSS ASGNVGDGSP 120 ERLRNLNAPS PDSGDSTTCL AGFRDTSSVA GEGRVKLEDE EERKGWGVKR KKGREDGEVS 180 DTNMNAVSRS SKYRRSGSSD QGTSSCVFSA VNEDEDKRRA RLMRNRESAQ LSRQRKKHYV 240 EELEEKVRSM HSTITELNRK VSFIMAENAT LRQQLAGGGG PGNCPRPAVY PTPPPMTSMH 300 FPWIPYSGYP ARPQGAQVPL VPIPRLKQQQ VASAPKPRKS ESRKAESKTK KVASVSILGL 360 LFCMLFVGVF VPGVKHTDGR SKDLVWNEER YSNDKAIGHP RGRVLTVRGS INRPNVTDKV 420 GMRDQKEQTS HHTPGLPGNA SKPLFASLYV PRNDKLVKID GNLIIQSVLA SERAMANSGS 480 ATKSSSGQQQ SDKESKETSL AVAGTLGLAL PVSKSGREME RHAHLYKSIV EYQRSRAYAS 540 KDRYRDDSKP GPADAPVKEW FQEGLEGPIL SSGMCTEVFR FDVSPASTGG IIPAAPAAPA 600 AAAAVNRTAN SSHPAKTRNR RALHPYAQPI PLPSAAPQNG TEEGGGGGAA GRPASPAMVV 660 SVLVDPREAA DAEFEGVISP KSVSRVFVVV LLDSVKYVTY SCVLPFKAPA ATHHL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010909305.1 | 0.0 | bZIP transcription factor 39 | ||||
TrEMBL | A0A1D1Z8V5 | 0.0 | A0A1D1Z8V5_9ARAE; TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment) | ||||
STRING | XP_008810348.1 | 1e-169 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8228 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40950.1 | 1e-110 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo29G0004400 |