PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo29G0004400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 716aa    MW: 76693.9 Da    PI: 7.3562
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo29G0004400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.42.8e-12213274162
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      e e+kr  r+++NRe+A+ sRqRKk ++eeLeekv ++ +  ++L  +++ +  e a+l+++
  Spipo29G0004400 213 EDEDKRRARLMRNRESAQLSRQRKKHYVEELEEKVRSMHSTITELNRKVSFIMAENATLRQQ 274
                      6799*********************************************9999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-16213277IPR004827Basic-leucine zipper domain
PfamPF001701.4E-10213275IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.634215275IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.8E-16217275No hitNo description
SuperFamilySSF579596.19E-12217275No hitNo description
CDDcd147043.31E-21218269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MAEAAVIDPV PCERRDENEA FEANFAGGFD PLQFPDIPAD MTLSAGFMAD LDFDADLDFE  60
GDLDFSVADL LDIPEVDDDL LDGQAEGGAA PFSSSVSDCK GGSGMSSSSS ASGNVGDGSP  120
ERLRNLNAPS PDSGDSTTCL AGFRDTSSVA GEGRVKLEDE EERKGWGVKR KKGREDGEVS  180
DTNMNAVSRS SKYRRSGSSD QGTSSCVFSA VNEDEDKRRA RLMRNRESAQ LSRQRKKHYV  240
EELEEKVRSM HSTITELNRK VSFIMAENAT LRQQLAGGGG PGNCPRPAVY PTPPPMTSMH  300
FPWIPYSGYP ARPQGAQVPL VPIPRLKQQQ VASAPKPRKS ESRKAESKTK KVASVSILGL  360
LFCMLFVGVF VPGVKHTDGR SKDLVWNEER YSNDKAIGHP RGRVLTVRGS INRPNVTDKV  420
GMRDQKEQTS HHTPGLPGNA SKPLFASLYV PRNDKLVKID GNLIIQSVLA SERAMANSGS  480
ATKSSSGQQQ SDKESKETSL AVAGTLGLAL PVSKSGREME RHAHLYKSIV EYQRSRAYAS  540
KDRYRDDSKP GPADAPVKEW FQEGLEGPIL SSGMCTEVFR FDVSPASTGG IIPAAPAAPA  600
AAAAVNRTAN SSHPAKTRNR RALHPYAQPI PLPSAAPQNG TEEGGGGGAA GRPASPAMVV  660
SVLVDPREAA DAEFEGVISP KSVSRVFVVV LLDSVKYVTY SCVLPFKAPA ATHHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909305.10.0bZIP transcription factor 39
TrEMBLA0A1D1Z8V50.0A0A1D1Z8V5_9ARAE; TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)
STRINGXP_008810348.11e-169(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82283545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.11e-110bZIP family protein