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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo28G0022100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | LBD | ||||||||
Protein Properties | Length: 134aa MW: 15314.4 Da PI: 7.3041 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.3 | 4.7e-42 | 6 | 103 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaC++lrr+C++dCvlapyfp+++p +fa+vh++FGasnv+++l+ +p e+r +a++s++yeA +r+rdPvyG+vg+i++lqq+++ ++ el Spipo28G0022100 6 RCAACRYLRRRCTEDCVLAPYFPSTHPDRFACVHRIFGASNVSRMLQLVPVEQRGQAADSIAYEAYWRMRDPVYGCVGIITRLQQEIQASQREL 99 6********************************************************************************************* PP DUF260 95 allk 98 a+++ Spipo28G0022100 100 AETR 103 9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.435 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-41 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MSNSTRCAAC RYLRRRCTED CVLAPYFPST HPDRFACVHR IFGASNVSRM LQLVPVEQRG 60 QAADSIAYEA YWRMRDPVYG CVGIITRLQQ EIQASQRELA ETRALVAMNA AEETRQREIP 120 AAWDLVSFPS DDFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-34 | 7 | 99 | 12 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-34 | 7 | 99 | 12 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020264151.1 | 1e-56 | LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 2e-43 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | M0RPH8 | 9e-54 | M0RPH8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P04980_001 | 1e-54 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-35 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Spipo28G0022100 |