PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo28G0008200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SBP
Protein Properties Length: 1091aa    MW: 120536 Da    PI: 7.1224
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo28G0008200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.62.4e-40163240178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqv++C+adls+ak+yhrrhkvCe+hsk+++++v  ++qrfCqqCsrfh+l efDe+krsCrrrLa+hn+rrrk+q+
  Spipo28G0008200 163 MCQVDDCKADLSRAKDYHRRHKVCEIHSKTTKAMVGSQMQRFCQQCSRFHSLGEFDEGKRSCRRRLAGHNRRRRKTQP 240
                      6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-33157225IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.829161238IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-37162242IPR004333Transcription factor, SBP-box
PfamPF031108.5E-29164237IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.31E-6837979IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-5877988IPR020683Ankyrin repeat-containing domain
CDDcd002042.57E-6881981No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1091 aa     Download sequence    Send to blast
MEGDMGAQVS SPIFIHQGLS GGFHEVNSLA RKRDLTWQGG NFLYNHHQQK NQQRMIGSAY  60
ANTPGNWNPK SWDWDSTRFV ARPASSVSDG APLGTPSPVA EMQKKGTREE SLASLDLVKG  120
TEVEGESLTL KLGGGSHPVE ESVGRSSKRV RSGSPGNGAS YPMCQVDDCK ADLSRAKDYH  180
RRHKVCEIHS KTTKAMVGSQ MQRFCQQCSR FHSLGEFDEG KRSCRRRLAG HNRRRRKTQP  240
KDISSPLVYP TIQENYGGGN LNIVDLLAIL TRLQDNGVDK AGSSSLPNKD RIIQALGEID  300
SLPDLNSSAK LPTCGILDLN VSQTSQVSLE QPSKAYKKSS APPTMDLLAA LSSASRVHGS  360
SPVVAPLSGE SSESSDDSKR RVNFQEPVTD MDSQTKSSAF PPFFIQSVAA PSSPEISEHS  420
VEENTPGLQL QLFSASEGAS PPKTSSSSKD QSTENSSPTD DRSPLSSPTL QRLFPLQSEA  480
EALRPGCIAI SRDVNGVIQS GSGKEYGSLL ELSRNSKRKV VNSTISNLQY RSDYTSSSGS  540
DHSPSSSESD NQDRTGRIIF KLFGKDPSSF PGTLRTQILS WLSHSPSDME SYIRPGCVVL  600
SIYLSMSSLA WAKLEEDLAQ RVNFLIQCTD SSFWRNARFM VHTAKQLVSH KDGKIHLCKS  660
WRTWRAPEII SISPLAVVSG KETSLILRGR NLSVPGTKLH CTYMGTYTSK EVPDSSYPGT  720
FYDDSSVETF TFPGGASDVF GRCFLEVENA FKGNSFPVIV ADDKICRELR HLESELEDDL  780
RTSDLMMQRE MAPDCMQSRS RELALHFLNE LGWLFQRKSI SSSSLSSSFS NSRFKFLLVF  840
SVERDWPALV KKLLDIFVEE SSRKLELVQE SLEMLSEIQL LHRAVKRRCR KMVDLLLHYS  900
VSDEMGASRL YLFPPNMVGP GGITPLHLAA SMEDSDDIVD GLTDDPQEIG LSCWSSSVDD  960
DGQSPHSYAS MRNNLSYNRL ITRKIADRRN GQFSITVDPE EEINPEKPSS SMETVTPKPW  1020
SLQMIYSQCS ILEMRRIKST QQTVGFQLPY IHSILAIAAV CVCVCVFLRG SPVFGSVYSF  1080
RWENLDFGAS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-30152237384squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1882887RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932155.10.0squamosa promoter-binding-like protein 15 isoform X1
RefseqXP_010932156.10.0squamosa promoter-binding-like protein 15 isoform X1
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A1D1ZCN60.0A0A1D1ZCN6_9ARAE; Squamosa promoter-binding-like protein 15
STRINGXP_008799143.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14