PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Spipo28G0003900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 282aa MW: 30346.2 Da PI: 7.1502

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo28G0003900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.1e-09	206	253	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++sLq Spipo28G0003900 206 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQSLQ 253 8*************************9....788889999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.14E-8	200	257	No hit	No description
SuperFamily	SSF47459	3.14E-15	200	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.526	202	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.5E-15	202	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-6	206	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-8	208	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDPGGSSGDR SGNSGEYGHE IAESLRFQEE IQSLMTEHES GAENGSSFTA LLGLPANQAM 60 ELLHESEIGD SPAVSPPGVC SIWRLLVDDP KGLAGFPLGS VPTFPSNTDL VERAARLSVF 120 AAEDSPQTSS SKVVKTEPAV SDSNPDSSPA RKPQLRPLKR KEPEKSKAKG SAKRPKSSLE 180 KSVPKPTEEK LPYVHVRARR GQATDSHSLA ERARREKINA RMKLLQELVP GCSKISGTAL 240 VLDEIINHVQ SLQRQVEFLS MRLAAVNPRI DFSGLDSFLS A*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029118663.1	1e-115	transcription factor bHLH48 isoform X4
Swissprot	Q8VZ02	1e-64	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A1D1XWD3	1e-125	A0A1D1XWD3_9ARAE; Transcription factor bHLH48
STRING	XP_008782895.1	1e-108	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	3e-69	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo28G0003900

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]