PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo26G0022200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

WOX

Protein Properties

Length: 427aa MW: 46027.3 Da PI: 6.9062

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo26G0022200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.2	5.8e-18	84	144	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p +ee++++ ++l ++ +++V++WFqNr+ + k+ Spipo26G0022200 84 KPRWNPKPEQIRILEAIFNSgMVNPPREEIRKIRTQLqeygQVGDANVFYWFQNRKSRSKH 144 89***************99***********************************995 PP
2	Wus_type_Homeobox	111.3	5.2e-36	83	146	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P++eei++i+++L+eyG+++d+NVfyWFQNrk+R+++kq Spipo26G0022200 83 PKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRTQLQEYGQVGDANVFYWFQNRKSRSKHKQ 146 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.05E-12	79	151	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.673	80	145	IPR001356	Homeobox domain
SMART	SM00389	5.1E-9	82	149	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.0E-7	83	150	IPR009057	Homeodomain-like
CDD	cd00086	8.64E-9	83	146	No hit	No description
Pfam	PF00046	1.5E-15	84	144	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MSQFRGCFSP HLTMFGQSPT TSPVVRAIMA SSNRHWPSLF KSKPCNSHLQ WPHDINSSSL 60 LSSACQKTPY PSVPPCEERS PEPKPRWNPK PEQIRILEAI FNSGMVNPPR EEIRKIRTQL 120 QEYGQVGDAN VFYWFQNRKS RSKHKQRHLQ ASRPHSRFTN TTPAATASAG SSSSSSSSER 180 STGSDKTLLS PTIGGASATT DTSNSPVPPV PQPFFQQANG DFYDEPFFFH GLPEYCFSTA 240 DFACLVGVPD GGLGICHGLL TDLMSHERCN KGGDEEATMK MHLHHSYALA AASSAPSSAT 300 TADVASAATA KIIAATGPST ADTMTDIIHG IGTCAPRSTV FINGVAFDVG TGPVNLREAF 360 GEHTVLLQSS GHPVLVDDWG VTLHPLQHGA SYYLRVPSSH LRPIHAVDDH PSADGTPHFD 420 GEPSEE*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MSQFRGCFSP HLTMFGQSPT TSPVVRAIMA SSNRHWPSLF KSKPCNSHLQ WPHDINSSSL  60
LSSACQKTPY PSVPPCEERS PEPKPRWNPK PEQIRILEAI FNSGMVNPPR EEIRKIRTQL  120
QEYGQVGDAN VFYWFQNRKS RSKHKQRHLQ ASRPHSRFTN TTPAATASAG SSSSSSSSER  180
STGSDKTLLS PTIGGASATT DTSNSPVPPV PQPFFQQANG DFYDEPFFFH GLPEYCFSTA  240
DFACLVGVPD GGLGICHGLL TDLMSHERCN KGGDEEATMK MHLHHSYALA AASSAPSSAT  300
TADVASAATA KIIAATGPST ADTMTDIIHG IGTCAPRSTV FINGVAFDVG TGPVNLREAF  360
GEHTVLLQSS GHPVLVDDWG VTLHPLQHGA SYYLRVPSSH LRPIHAVDDH PSADGTPHFD  420
GEPSEE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010918996.1	1e-129	WUSCHEL-related homeobox 8 isoform X1
TrEMBL	A0A2H4A099	1e-123	A0A2H4A099_PHODC; WUSCHEL-related homeobox 9
STRING	XP_008811551.1	1e-128	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2666	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	2e-57	homeobox-3

Link Out ? help Back to Top
Phytozome	Spipo26G0022200