PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo25G0017500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 441aa MW: 47449.6 Da PI: 6.6194

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo25G0017500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	5.1e-09	271	319	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Spipo25G0017500 271 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 319 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.37E-17	266	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.04E-11	266	323	No hit	No description
PROSITE profile	PS50888	15.485	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-16	269	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-6	271	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-10	274	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MDSGQKDRGD DRLSYHGSDI HGDWRFSGPQ MSFFGPPAVP EGDQICYSSS SSAMAAPFGR 60 RLWETAANSQ SPALPPPALD MAWNPPAAMP DSAGALFSRN GNGIFLHGLP QFPADPPFVE 120 RASRPSSFNG FAAGGMGSPS SGPGMVISGA HSQRSNPTPG RAPPKNDDRH DLELRAGGHQ 180 EENPSSETTA GDPSSAGSLP RKRKRGNQEA GLEPEQAMGD AQRSAEAPKE SHENKMADER 240 KNSSSEHGKD SAEPPKEDYV HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCSK 300 VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPHVDFNI EGLFLKEILQ SQSVPMPSIG 360 FPPEIGPPQL HPGQSSLVQP GIPRTGNPSE ALRRAINAQL AAVSSYGEPP NQIPSAWADE 420 LHNIQIGAHD FHGGHLKTER *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MDSGQKDRGD DRLSYHGSDI HGDWRFSGPQ MSFFGPPAVP EGDQICYSSS SSAMAAPFGR  60
RLWETAANSQ SPALPPPALD MAWNPPAAMP DSAGALFSRN GNGIFLHGLP QFPADPPFVE  120
RASRPSSFNG FAAGGMGSPS SGPGMVISGA HSQRSNPTPG RAPPKNDDRH DLELRAGGHQ  180
EENPSSETTA GDPSSAGSLP RKRKRGNQEA GLEPEQAMGD AQRSAEAPKE SHENKMADER  240
KNSSSEHGKD SAEPPKEDYV HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCSK  300
VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPHVDFNI EGLFLKEILQ SQSVPMPSIG  360
FPPEIGPPQL HPGQSSLVQP GIPRTGNPSE ALRRAINAQL AAVSSYGEPP NQIPSAWADE  420
LHNIQIGAHD FHGGHLKTER *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943352.1	1e-108	transcription factor bHLH49 isoform X1
Refseq	XP_029116539.1	1e-108	transcription factor bHLH49 isoform X1
TrEMBL	A0A1D1Z5Y8	1e-139	A0A1D1Z5Y8_9ARAE; Transcription factor bHLH49
STRING	XP_008243775.1	1e-105	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	7e-72	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo25G0017500