PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo25G0005800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 271aa    MW: 29148.8 Da    PI: 8.9983
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo25G0005800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10185232455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Spipo25G0005800 185 SHSLAERVRREKISKRMKILQDLVPGC----SKIAGKAGMLDEIINYVQSLQ 232
                      8**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-16179249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-10179236No hitNo description
Gene3DG3DSA:4.10.280.101.7E-16181245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7185232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MMLQRPQLPD DNNQEATAAS HSTVLQGQRD RLINCWWDQP KHDDGRSLNP DLFCAFLADG  60
GDGAINQELP GGSPNRAQYP FLGSASGGGD DERTAAMGGG AAAASAAGAR RKREACTLKP  120
GNEGGDKRIK RDDVDGLVPK LESPPMSTIT TAASDNCGRK SKASAPPEKS DYIHVRARRG  180
QATDSHSLAE RVRREKISKR MKILQDLVPG CSKIAGKAGM LDEIINYVQS LQRQVEFLSM  240
KLAAVSPTID FGNIDALFGK QKIQKSWPHV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6Q5T81e-49A0A2R6Q5T8_ACTCH; Transcription factor bHLH63 like
TrEMBLA0A2Z6LVK72e-50A0A2Z6LVK7_TRISU; Uncharacterized protein (Fragment)
TrEMBLA0A427A1N21e-50A0A427A1N2_ENSVE; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.14e-49cryptochrome-interacting basic-helix-loop-helix 1