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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Spipo24G0023400 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
| Family |
C2H2 |
| Protein Properties |
Length: 287aa MW: 31903.5 Da PI: 10.3619 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Spipo24G0023400 | genome | MIPS/IBIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.6 | 2.3e-05 | 55 | 75 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C++Cgk F r nL+ H r H
Spipo24G0023400 55 CEICGKGFQRDQNLQLHRRGH 75
*******************88 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
RNGVNPLSSL LVSQGRPPML HKIKKKRNQP GNPDPEAEVV ALSPRTLMAT NRFLCEICGK 60
GFQRDQNLQL HRRGHNLPWK LKQREGNGAA RKKVYVCPEE TCTHHHPSRA LGDLTGIKKH 120
FWRKHGEKRW SCIRCTKKYA VMSDWKAHFK TCGTREYKCS CGATFSRKDS FATHRAFCEA 180
LAEESARFTA SVVAAAAAAA AEPPANVTSA GITPPFPTQQ EHQHHQLSEL LPFPCWDGPI 240
RNPNPNLVPN RGNVHMGALP FILQDNQIPS NSITNGPFLS ATALLRG
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 79 | 92 | KLKQREGNGAARKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
