PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo23G0024200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 160aa MW: 17047.6 Da PI: 9.0927 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 25 | 47 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Spipo23G0024200 25 FECKTCNRKFPSFQALGGHRASH 47 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00035 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H Spipo23G0024200 71 HECSICGLEFSVGQALGGHMRRH 93 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.85E-8 | 23 | 93 | No hit | No description |
Pfam | PF13912 | 1.3E-12 | 24 | 49 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.827 | 25 | 52 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 25 | 47 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 27 | 47 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-10 | 70 | 95 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.494 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MASVLMLLSR GAGGEEAAHH SGRVFECKTC NRKFPSFQAL GGHRASHKKP RLAAGDPHGA 60 AQAHAGKPRV HECSICGLEF SVGQALGGHM RRHRAAAEGF TLALLEKKPS AVEKEKKGAA 120 AAAAPRYLDL DLNQPPMDSE MDFRPLPFSL GFPMIDCLH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922390.1 | 3e-54 | zinc finger protein ZAT11 | ||||
Swissprot | Q681X4 | 8e-30 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A2H3Z309 | 2e-51 | A0A2H3Z309_PHODC; zinc finger protein ZAT12 | ||||
STRING | XP_008807730.1 | 4e-52 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-32 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo23G0024200 |
Publications ? help Back to Top | |||
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