PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo22G0040700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | bHLH | ||||||||
Protein Properties | Length: 177aa MW: 19790.9 Da PI: 9.9507 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.9 | 2.3e-10 | 23 | 70 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRd++N++f eL +l + + +K++Ka+iL A++ + +L Spipo22G0040700 23 TKACREKMRRDKLNDRFLELSYILDPG---RPPKVDKAAILSDATRRLAQL 70 6789********************997...89*************988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.449 | 19 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.94E-7 | 20 | 75 | No hit | No description |
SuperFamily | SSF47459 | 2.62E-12 | 20 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.5E-8 | 23 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-11 | 24 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-6 | 25 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
FSLGFLSDDP CRNRAGSPAK PGTKACREKM RRDKLNDRFL ELSYILDPGR PPKVDKAAIL 60 SDATRRLAQL RLEAEKLRES NEALQSTIKV LKAEKMELRD EKVKLKAEKD RMEQVLNDAG 120 MPPRAPPFVP HHPAAYVACT KNVPFASYPP PLAMWQWLPP TAVDTSQDHV LRPPVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010256783.1 | 4e-66 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 4e-55 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A1D1Y7S3 | 1e-75 | A0A1D1Y7S3_9ARAE; Transcription factor ILR3 | ||||
STRING | XP_010256783.1 | 2e-65 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9386 | 31 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo22G0040700 |