PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo22G0031100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 189aa    MW: 20075.7 Da    PI: 7.2331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo22G0031100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95.1e-105394955
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      r RR+ri ++f  L++l+P        K++ +++Le+A++Y+k Lq
  Spipo22G0031100 53 ARERRHRISHRFKILQSLVPGG-----SKMDTVSMLEEAIHYVKFLQ 94
                     699*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1044493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1349101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-125097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.17E-145097No hitNo description
SMARTSM003533.0E-125099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-75394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MASFAYQLQG EDHLLLSAGA ETGPTAADPA GKGKQRKRGS GVKLSTDPQS VAARERRHRI  60
SHRFKILQSL VPGGSKMDTV SMLEEAIHYV KFLQAQIILH QSAVASATPL VAPPPAAAAV  120
FFPSDYEGAY FTGGVSPDAG ASPEFPPPPQ GFNYSLPPLP PLPGRPSCTF PEEEHLFPWA  180
SSVNHYSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027351330.11e-35transcription factor LAX PANICLE 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.14e-28APRATAXIN-like