PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0040100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 393aa    MW: 43132.3 Da    PI: 4.7034
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0040100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.11.1e-1392138349
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                      i  k  r + f+kRr+g++KK  ELS LC+++ + ++ ss gkly +
  Spipo21G0040100  92 IAKKEARDICFTKRRQGLFKKLCELSRLCGVDTLALVNSSAGKLYPF 138
                      677889***************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-1782141IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.73682142IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-1983154IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-1184104IPR002100Transcription factor, MADS-box
PfamPF003191.1E-1592138IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-11104119IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-11119140IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDSRDSSDLM DSKSHSCGSE DQGSRSYGFK MWFFSEISFL VDSRKRRFLH ANQTPPTQHT  60
FVQVSSRLGW FPGVMEGKPA TSGRRKITME LIAKKEARDI CFTKRRQGLF KKLCELSRLC  120
GVDTLALVNS SAGKLYPFGT PDVPTAVDRF LMLHAEGGAA AAEGPQQVAE ETQQAAEGRQ  180
GEVLRELFDE LHSLETRLRE LQQQRATLAR AVEEKASRLP HRWRSKLADL PTEELEEMLV  240
VLQKLQEKVN NVSDPPAESA SVPKPTDLES IVDQGFTSPG LHQSALYIPM PSIVPAPSLV  300
DPSAFSVRLG DWEATVKPSC GTLQLLESIH GGSTSQALER NPEIQPLGDT AGLEGFWENG  360
ANAGADMEGT DDDASSSSFD YMDFIDIPSD QD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-14AGAMOUS-like 62