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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo20G0034900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ZF-HD | ||||||||
Protein Properties | Length: 292aa MW: 30517.3 Da PI: 9.0264 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 95.9 | 3.1e-30 | 67 | 126 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpse......geegtaaalkCaACgCHRnFHRrev 57 ++Y+eC++NhAa+lGgha+DGCgEfmps+ ++ g+++al CaACgCHRnFHRr Spipo20G0034900 67 AVYRECMRNHAAALGGHALDGCGEFMPSPvpvsvsDAAGEPSALACAACGCHRNFHRRLL 126 58*************************9633332133477*****************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-11 | 68 | 124 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.8E-26 | 68 | 124 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.153 | 69 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.4E-26 | 69 | 124 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.37E-15 | 161 | 228 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-26 | 169 | 229 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.5E-22 | 171 | 226 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MELHQYLEPP PQPQQQQGRR PWPPPKEMAA DQDVKPRGVL PLPLSNGVLG KKTAPAAAPS 60 SPPPPPAVYR ECMRNHAAAL GGHALDGCGE FMPSPVPVSV SDAAGEPSAL ACAACGCHRN 120 FHRRLLRREE QEGDGRSSSP AAAAAAPFGP SGHHVLVGLG GGLPGRIPQG KRFRTRFSPE 180 QKARMKEVCE RLGWRMQKRD EGLVAECCRE IGVSRGVFKV WMHNNKHNFL GGPSSRRAAT 240 GGAAGGAPPD GGGDSEEASS CRADDGAADA FANGAGDRAV KRPSSKAQGD G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-18 | 171 | 235 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010937133.1 | 3e-58 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9SEZ1 | 5e-47 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A427AFV3 | 2e-59 | A0A427AFV3_ENSVE; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P02700_001 | 4e-60 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9204 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-27 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Spipo20G0034900 |
Publications ? help Back to Top | |||
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