PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo20G0029600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 379aa    MW: 42103.8 Da    PI: 8.6069
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo20G0029600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.12.4e-1063104341
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                       +k+ +r+++NReAAr+sR++Kka+i +Le    k ++Le+e
  Spipo20G0029600  63 NDKVLKRLAQNREAARKSRLKKKAYIHQLEScrsKLAQLEQE 104
                      689**************************9722244444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.7E-761129IPR004827Basic-leucine zipper domain
PfamPF001701.4E-763104IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.54263107IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.74E-665107No hitNo description
Gene3DG3DSA:1.20.5.1703.7E-767110No hitNo description
PROSITE patternPS0003606883IPR004827Basic-leucine zipper domain
PfamPF141441.9E-29151224IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAIYELNKHM GLWIEALGAD SSQNTATSTV LEPEPKAPPH QSQDAHEIRG SARESDQEAT  60
KPNDKVLKRL AQNREAARKS RLKKKAYIHQ LESCRSKLAQ LEQELERARK QGGATGGSPR  120
DSFLAIPRTV NSGAATFEVE YGRWVEEQNR QVRDLRAALQ AHASDVELRI LVESGMSHYD  180
ELFRMKAAAT EADVFFIISG MWKTSAERVF LWIGGFRPSA VLKVRQRSGC TQLHSWKGLA  240
LNVPYFFQVL SPQLDPLTEQ QVMAVYNLQL SSQQAEDALT QGMDKLQQTL SETLVADQPS  300
AAVTAPNCMG QMTTAMGKLE ALVSFVNQAD HLRHQALQQM HRILTTRQAA RGLLALGDYC  360
QQLRALSSVW AAQPREPA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905948.11e-169transcription factor TGA4 isoform X1
RefseqXP_029117024.11e-169transcription factor TGA4 isoform X1
SwissprotQ391621e-130TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A1D1ZIG21e-178A0A1D1ZIG2_9ARAE; Transcription factor TGA1
STRINGGSMUA_Achr5P16630_0011e-162(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-133TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]