 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Spipo20G0022400 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
Family |
HD-ZIP |
Protein Properties |
Length: 257aa MW: 28108.7 Da PI: 4.309 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Spipo20G0022400 | genome | MIPS/IBIS | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 60.5 | 2.6e-19 | 41 | 93 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++++ eq+++Le+ Fe+++++ e++ +LA++lgL rqV vWFqNrRa++k
Spipo20G0022400 41 KRRLSGEQVRALERSFEEENKLEPERKVRLAEELGLRPRQVAVWFQNRRARWK 93
44799***********************************************9 PP
|
2 | HD-ZIP_I/II | 110.8 | 9.1e-36 | 39 | 106 | 1 | 68 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkr 68
e+krrls eqv++LE+sFeee+kLeperKv+la+eLgl+prqvavWFqnrRAR+k+kqlE+dy+aLk
Spipo20G0022400 39 ERKRRLSGEQVRALERSFEEENKLEPERKVRLAEELGLRPRQVAVWFQNRRARWKAKQLERDYAALKW 106
69****************************************************************94 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MKRTRSSSSS ELMGLSATGE EGVYEDEDGG GGAAATGGER KRRLSGEQVR ALERSFEEEN 60 KLEPERKVRL AEELGLRPRQ VAVWFQNRRA RWKAKQLERD YAALKWRSCG RGPAKKEEEE 120 EEEEEEVVVA GEDYDSKVGL SEEEPLLPAE SDDSAAVVTG AGDECSPAPR GQPQLAGPPP 180 LIPALDGGAA ADGYYYCDDP PSFYHRHLSG SPPPVVVRMV EEHNFLSSDE PFGGGGSLFA 240 DDQPPTLSWY YSDQWS*
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 38 | 43 | ERKRRL |
2 | 87 | 95 | RRARWKAKQ |