 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Spipo20G0022400 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 257aa MW: 28108.7 Da PI: 4.309 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Spipo20G0022400 | genome | MIPS/IBIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.5 | 2.6e-19 | 41 | 93 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++++ eq+++Le+ Fe+++++ e++ +LA++lgL rqV vWFqNrRa++k
Spipo20G0022400 41 KRRLSGEQVRALERSFEEENKLEPERKVRLAEELGLRPRQVAVWFQNRRARWK 93
44799***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 110.8 | 9.1e-36 | 39 | 106 | 1 | 68 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkr 68
e+krrls eqv++LE+sFeee+kLeperKv+la+eLgl+prqvavWFqnrRAR+k+kqlE+dy+aLk
Spipo20G0022400 39 ERKRRLSGEQVRALERSFEEENKLEPERKVRLAEELGLRPRQVAVWFQNRRARWKAKQLERDYAALKW 106
69****************************************************************94 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MKRTRSSSSS ELMGLSATGE EGVYEDEDGG GGAAATGGER KRRLSGEQVR ALERSFEEEN 60
KLEPERKVRL AEELGLRPRQ VAVWFQNRRA RWKAKQLERD YAALKWRSCG RGPAKKEEEE 120
EEEEEEVVVA GEDYDSKVGL SEEEPLLPAE SDDSAAVVTG AGDECSPAPR GQPQLAGPPP 180
LIPALDGGAA ADGYYYCDDP PSFYHRHLSG SPPPVVVRMV EEHNFLSSDE PFGGGGSLFA 240
DDQPPTLSWY YSDQWS*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 38 | 43 | ERKRRL |
| 2 | 87 | 95 | RRARWKAKQ |
