PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo20G0016600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | TCP | ||||||||
Protein Properties | Length: 293aa MW: 32359.8 Da PI: 8.5067 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 133.2 | 2.4e-41 | 102 | 233 | 3 | 133 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.....seceaesssssasnsssgkaa 91 +kdrhski T++g+RdRR+Rls+++a+rfFdLqd+LGfdk+s+t++WL+ ++ +ai l +s+s+ sece +s + +++ + Spipo20G0016600 102 QRKDRHSKIFTAQGPRDRRMRLSLDVARRFFDLQDMLGFDKASNTVDWLMAKSGTAIGGLIPPQSDSKgesstSECEVNSLVLNEK----TTPP 191 69**********************************************************99966666433335554444444444....4444 PP TCP 92 ksaakskksqksaasalnlakesrakarararertrekmrik 133 +++ + ++ ++a s+ +la+esr arararertrek++++ Spipo20G0016600 192 RASGVTTHTARKAPSHPSLARESRVMARARARERTREKKMME 233 55554445555555579*********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.8E-38 | 102 | 232 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.785 | 103 | 161 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.122 | 212 | 229 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MAHSEWQWTA VYNRKEGEGN GDVNFQTATT ISHPFNRSLL GDHEMNQYHH PPSLERGFLS 60 DRLVSNRDDA HTPALAPKDS SPPREPSTTP GSDGARGRRR SQRKDRHSKI FTAQGPRDRR 120 MRLSLDVARR FFDLQDMLGF DKASNTVDWL MAKSGTAIGG LIPPQSDSKG ESSTSECEVN 180 SLVLNEKTTP PRASGVTTHT ARKAPSHPSL ARESRVMARA RARERTREKK MMEVVAEMGR 240 PSSLTSGGSG HISIFDYTQN GSQNAEASEF AAEQWEDAIP HDDITVYAFI GV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028556330.1 | 5e-40 | transcription factor CYCLOIDEA-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 1e-27 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Spipo20G0016600 |