PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo20G0012800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family BBR-BPC
Protein Properties Length: 317aa    MW: 34822 Da    PI: 10.2407
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo20G0012800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind310.94.2e-95263161301
        GAGA_bind   1 mdddgsre.rnkg.yyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd..maflqrdkalaernkalverd.nkllalllven 89 
                      m+d+g    rn+g yye+  ++k  l+lqlms   erd k+  +n a+ +++  v+e    m++ +r++++ +  +++++rd nk++++l+++ 
  Spipo20G0012800  26 MEDNGGLGmRNWGgYYEQP-QMKGGLSLQLMSAG-ERDPKPILHNGAFLQRDCGVQEPPvpMEY-MRESWMYH--HHHHHRDnNKMVHVLPMNP 114
                      788887777****999988.***********987.9*****99999888888888776677***.9*****99..5555555166777777554 PP

        GAGA_bind  90 slasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkp.kekkakkkkkkseks..kkkvkk 180
                      +       +     g+ +++   + +  q+ ++++++++ +   +   ++++ + ++ +++kkr+++++p k++kakk+k+ +++    ++ kk
  Spipo20G0012800 115 N-------Y---GAGAMEVHPAGNPHTLQMLEQPEPTSKAD---KVLASSEPGNGRKGAQPKKRAQERNPyKVPKAKKPKNAPPQRdgADNIKK 195
                      4.......2...23333333333444466777888866655...44555677777777777777777666477888888887655411456666 PP

        GAGA_bind 181 esaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                      +sa ++ k +kks+ +v+ng++lD+s+lP+PvCsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP++tkrrgaRiagrKmS gafkk+LekL  
  Spipo20G0012800 196 NSAASQGKGPKKSMAMVINGMNLDISQLPTPVCSCTGTPQQCYRWGTGGWQSACCTTNISMYPLPMNTKRRGARIAGRKMSLGAFKKVLEKLVC 289
                      6666899*************************************************************************************** PP

        GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
                      eG+dlsn++DLk+hWAkHGtnkfvti+
  Spipo20G0012800 290 EGHDLSNAIDLKTHWAKHGTNKFVTIK 316
                      **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.0E-9626316IPR010409GAGA-binding transcriptional activator
SMARTSM012266.4E-13326316IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAGILGSSLG FRSPPDLFSY SRSVAMEDNG GLGMRNWGGY YEQPQMKGGL SLQLMSAGER  60
DPKPILHNGA FLQRDCGVQE PPVPMEYMRE SWMYHHHHHH RDNNKMVHVL PMNPNYGAGA  120
MEVHPAGNPH TLQMLEQPEP TSKADKVLAS SEPGNGRKGA QPKKRAQERN PYKVPKAKKP  180
KNAPPQRDGA DNIKKNSAAS QGKGPKKSMA MVINGMNLDI SQLPTPVCSC TGTPQQCYRW  240
GTGGWQSACC TTNISMYPLP MNTKRRGARI AGRKMSLGAF KKVLEKLVCE GHDLSNAIDL  300
KTHWAKHGTN KFVTIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787890.11e-110protein Barley B recombinant-like
SwissprotQ8GUC36e-80BBR_HORVU; Protein Barley B recombinant
TrEMBLA0A1D1YN121e-129A0A1D1YN12_9ARAE; Protein BASIC PENTACYSTEINE1
STRINGXP_008787890.11e-109(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.25e-72basic pentacysteine1