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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo1G0108300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 24889.3 Da PI: 10.2944 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.3 | 1.3e-15 | 16 | 56 | 6 | 46 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 rqv+ skRr g++ KA ELS LCdae av+++s+ k+ Spipo1G0108300 16 RAPRQVSISKRRRGLFRKACELSALCDAESAVLVMSPGSKV 56 5679********************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-10 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.25 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-11 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-17 | 7 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.7E-15 | 13 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-11 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-11 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MARAPRREHV SRITLRAPRQ VSISKRRRGL FRKACELSAL CDAESAVLVM SPGSKVFSLG 60 DPDVNTVVDR FLDYATRQVP APEAGHHGWK RGGAAMVSGA ERGRLQPGGR IRHHGRRILI 120 EELYRLHAKR ESWLVAANAR SEELMAGIRE MQNQLPHRWA AKVEELELTE LEEMTDALED 180 LAVRVSQVIS GRQAQEGREA SWNPAGSSND AAVSAGIMSP SWAKA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-18 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Spipo1G0108300 |