 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Spipo1G0106500 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 276aa MW: 30495.6 Da PI: 9.4258 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Spipo1G0106500 | genome | MIPS/IBIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 53.5 | 4.1e-17 | 102 | 158 | 2 | 56 |
T--SS--HHHHHHHHHHHH..HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFe..knrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rkR ++++eq +Le+ F+ + +p +++++ LAk+l+L rqV vWFqNrRa+ k
Spipo1G0106500 102 RKRLRLSNEQSAVLENTFRvhQMLNPEQTQKTALAKQLNLRPRQVEVWFQNRRARTK 158
89*****************44466888889999**********************98 PP
|
| 2 | HD-ZIP_I/II | 103.5 | 1.8e-33 | 102 | 192 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLepe..rKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+k++rls+eq+++LE++F+ ++ L+pe +K++la++L+l+prqv+vWFqnrRARtk+kq+E ++Lkr++++l+een+rL +ev++Lr +
Spipo1G0106500 102 RKRLRLSNEQSAVLENTFRVHQMLNPEqtQKTALAKQLNLRPRQVEVWFQNRRARTKLKQTELSRDFLKRHCEKLTEENQRLLSEVQHLR-S 192
5899********************99733699*********************************************************9.4 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MTAEGVELEF TLGNAAEPRW RSFLAAASAE RRRPAARPVC EGIDVNCEPP PAAAAEEMAG 60
GVSPRSIVSS VITGDNRKGD NGTDCPQGGS TSDEEDGNEG TRKRLRLSNE QSAVLENTFR 120
VHQMLNPEQT QKTALAKQLN LRPRQVEVWF QNRRARTKLK QTELSRDFLK RHCEKLTEEN 180
QRLLSEVQHL RSLKFSPTKL YMGMAAPPTT LTVCLSCQRS SATVPSPSLP ADSRRHHWPL 240
LLHQPLRPYH PIVTPLPHGT PARPPTGQHV TLGPM*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 30 | 37 | RRRPAARP |
| 2 | 152 | 160 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
