PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0086600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 339aa    MW: 39074.6 Da    PI: 6.6308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0086600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.44.7e-5671361129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv++yL+kkv++++++l +vikevd+y++ePwdL++  ++ a e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+v
  Spipo1G0086600   7 VPPGFRFHPTDEELVDYYLRKKVASREIDL-DVIKEVDLYRIEPWDLQEkcRIGAeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPV 100
                     69****************************.9***************953444442556************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     ++ +++l+g++ktLvfy+grap+g+k+dW+mheyrle
  Spipo1G0086600 101 YT-RHSLIGMRKTLVFYQGRAPNGQKSDWIMHEYRLE 136
                     **.889*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-614156IPR003441NAC domain
PROSITE profilePS5100560.1977156IPR003441NAC domain
PfamPF023651.2E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MNNFSHVPPG FRFHPTDEEL VDYYLRKKVA SREIDLDVIK EVDLYRIEPW DLQEKCRIGA  60
EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPV YTRHSLIGMR KTLVFYQGRA  120
PNGQKSDWIM HEYRLETNEN ASPLEEGWVV CRVFKKRVSP AQRTEDHEQP YAYDSQPSFI  180
PEFDPPMRMN SRPPDVPFLR DILHSCKREL ELRNHMPSEH HIRLPRLESS TLTAGIYATG  240
VSFLRNSSPA HEAQIQACIQ QQMISTYNYG STAQQASEQI TDWRVLDKFV ASQLSHGDTS  300
EGDHYPDADI IIQVPEKKEP IADHGSTSSS NSQAGLWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-52615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812366.11e-152NAC domain-containing protein 7-like
SwissprotQ9FWX21e-121NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A2H3ZEN31e-151A0A2H3ZEN3_PHODC; NAC domain-containing protein 7-like
STRINGXP_008812366.11e-152(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-111NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]