PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo1G0084400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NAC | ||||||||
Protein Properties | Length: 461aa MW: 50809.7 Da PI: 4.6377 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.8 | 4.2e-53 | 9 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptdeelv++yLk k++g+++ + evi+evd++k+ePw+Lp + +++++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++ Spipo1G0084400 9 LPLGFRFRPTDEELVNHYLKSKINGRTHLV-EVIPEVDVCKFEPWELPdQsVIRTGDPEWFFFAPRDRKYPNGHRSNRATEAGYWKATGKDRTIK 102 699************************777.99**************96347778999************************************* PP NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++++g+kktLvfy+grapkge+t+W+mheyr+ Spipo1G0084400 103 SRtvaGTANIGMKKTLVFYRGRAPKGERTTWIMHEYRV 140 *98888889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-61 | 4 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.189 | 9 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-28 | 10 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0071470 | Biological Process | cellular response to osmotic stress | ||||
GO:1900426 | Biological Process | positive regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MATLPLESLP LGFRFRPTDE ELVNHYLKSK INGRTHLVEV IPEVDVCKFE PWELPDQSVI 60 RTGDPEWFFF APRDRKYPNG HRSNRATEAG YWKATGKDRT IKSRTVAGTA NIGMKKTLVF 120 YRGRAPKGER TTWIMHEYRV INSASENDSD GVTGDQDSYV LCRLFKKPDE RGSNPNSEEV 180 EDSSFSPAQT GSSPSHKHHA EDAGEESVAP SNHDLLKSEV QEEPKRPDGV DQWCGDEADS 240 GVRYPVKAED GDNRGGHVAS DLGVHNGEAG AEMDPLLAAL DKLCGSQPEP LDSDGFLRMN 300 SPIYMDDFFS PFPPQFGHGD NNPRAEGEPC FLMAQGGHPA DGAQLCSAST SQRAQLWDSF 360 STKESLSTSD DAGAEMVMVQ NQAQRGRPDA EGSEWFFRSS ISSQNLGDLP LDHLFDHHGQ 420 SPAGIFSMES ATEPLQDAYS FGSFREPASQ DYSDAMRPTR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-50 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-50 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-50 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-50 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-50 | 8 | 167 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-50 | 8 | 167 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00108 | PBM | Transfer from AT4G35580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020240988.1 | 1e-103 | NAC domain-containing protein 62-like | ||||
TrEMBL | A0A1D1YBD8 | 1e-141 | A0A1D1YBD8_9ARAE; NAC domain-containing protein 78 | ||||
TrEMBL | A0A1D1ZDK6 | 1e-142 | A0A1D1ZDK6_9ARAE; NAC domain-containing protein 78 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5172 | 38 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 2e-84 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Spipo1G0084400 |