 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Spipo1G0084400 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
| Family |
NAC |
| Protein Properties |
Length: 461aa MW: 50809.7 Da PI: 4.6377 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Spipo1G0084400 | genome | MIPS/IBIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 170.8 | 4.2e-53 | 9 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lp GfrF+Ptdeelv++yLk k++g+++ + evi+evd++k+ePw+Lp + +++++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++
Spipo1G0084400 9 LPLGFRFRPTDEELVNHYLKSKINGRTHLV-EVIPEVDVCKFEPWELPdQsVIRTGDPEWFFFAPRDRKYPNGHRSNRATEAGYWKATGKDRTIK 102
699************************777.99**************96347778999************************************* PP
NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
s+ +++++g+kktLvfy+grapkge+t+W+mheyr+
Spipo1G0084400 103 SRtvaGTANIGMKKTLVFYRGRAPKGERTTWIMHEYRV 140
*98888889***************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0071470 | Biological Process | cellular response to osmotic stress |
| GO:1900426 | Biological Process | positive regulation of defense response to bacterium |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005789 | Cellular Component | endoplasmic reticulum membrane |
| GO:0005886 | Cellular Component | plasma membrane |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005516 | Molecular Function | calmodulin binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 461 aa
Download sequence Send
to blast |
MATLPLESLP LGFRFRPTDE ELVNHYLKSK INGRTHLVEV IPEVDVCKFE PWELPDQSVI 60
RTGDPEWFFF APRDRKYPNG HRSNRATEAG YWKATGKDRT IKSRTVAGTA NIGMKKTLVF 120
YRGRAPKGER TTWIMHEYRV INSASENDSD GVTGDQDSYV LCRLFKKPDE RGSNPNSEEV 180
EDSSFSPAQT GSSPSHKHHA EDAGEESVAP SNHDLLKSEV QEEPKRPDGV DQWCGDEADS 240
GVRYPVKAED GDNRGGHVAS DLGVHNGEAG AEMDPLLAAL DKLCGSQPEP LDSDGFLRMN 300
SPIYMDDFFS PFPPQFGHGD NNPRAEGEPC FLMAQGGHPA DGAQLCSAST SQRAQLWDSF 360
STKESLSTSD DAGAEMVMVQ NQAQRGRPDA EGSEWFFRSS ISSQNLGDLP LDHLFDHHGQ 420
SPAGIFSMES ATEPLQDAYS FGSFREPASQ DYSDAMRPTR *
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-50 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-50 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-50 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-50 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 3e-50 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 2e-50 | 8 | 167 | 16 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 2e-50 | 8 | 167 | 16 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
