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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo1G0082800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | SBP | ||||||||
Protein Properties | Length: 183aa MW: 19378 Da PI: 8.9243 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 67.6 | 2.6e-21 | 123 | 170 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cq+egC +dl++ak+yhr+hkvCe hs+a++v+v+gl++rfCqqCsr Spipo1G0082800 123 RCQAEGCGEDLNRAKHYHRKHKVCELHSRAAAVVVHGLSRRFCQQCSR 170 6**********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.4E-21 | 119 | 170 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 18.025 | 121 | 182 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-20 | 122 | 171 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.2E-15 | 124 | 170 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSSVTHSGEV AVTEQPHHRR QICPFYDSTG VDLFSGLSTL TPPPPPLAIS PMPVDDFAFR 60 QGDASWTPSL TELPPATRIG LNLGMRTYFA SAPVGEPVQP GAKVCKRSGG GSGGVVATAT 120 TARCQAEGCG EDLNRAKHYH RKHKVCELHS RAAAVVVHGL SRRFCQQCSR QGTHVKGPPV 180 PT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 8e-17 | 124 | 170 | 6 | 52 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_973738.1 | 7e-29 | squamosa promoter binding protein-like 8 | ||||
Swissprot | Q8GXL3 | 1e-28 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A1D1XIM9 | 2e-38 | A0A1D1XIM9_9ARAE; Squamosa promoter-binding-like protein 8 (Fragment) | ||||
STRING | AT1G02065.1 | 5e-27 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2375 | 35 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 2e-27 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Spipo1G0082800 |
Publications ? help Back to Top | |||
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