PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0082600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SBP
Protein Properties Length: 334aa    MW: 35749.2 Da    PI: 8.5072
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0082600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.2e-4191168178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC+  l +ak+yhrrhkvCe+hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk++a
  Spipo1G0082600  91 RCQVEGCNLALVDAKDYHRRHKVCEIHSKAPKVVVLGIEQRFCQQCSRFHVISEFDDSKRSCRRRLAGHNERRRKSSA 168
                     6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.4E-3487153IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.54789166IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-3990171IPR004333Transcription factor, SBP-box
PfamPF031104.0E-3292165IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010358Biological Processleaf shaping
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
IPFSSATSLP FSPHHHNLHT IAQAGDAHHL TCLKLGKRQY YEEGRASDPP AASGGLKRER  60
VATAVPRGSS SAAAAATASP PSSSSAMVVP RCQVEGCNLA LVDAKDYHRR HKVCEIHSKA  120
PKVVVLGIEQ RFCQQCSRFH VISEFDDSKR SCRRRLAGHN ERRRKSSAES VIRNPSPLDG  180
TAVGSGMPYL SPSNAAGHAL SLLSPKASSS WASSDLSSQS SAALRELIAE NRAAILAGQL  240
LLDRGTWHGA SPGAQVVFSI APQQQQQQPL PLTLPPQLED GWDHLRTPGA QVTLDLMQTP  300
SSSIEILSGR SRSKEGDEEC CDIWKSLEGT HVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-31921651184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919590.11e-118squamosa promoter-binding-like protein 7
TrEMBLA0A2H3ZVY21e-106A0A2H3ZVY2_PHODC; squamosa promoter-binding-like protein 7
STRINGXP_008802825.11e-107(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.44e-39squamosa promoter binding protein-like 10