PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo1G0077400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | bHLH | ||||||||
Protein Properties | Length: 189aa MW: 21625.1 Da PI: 11.2835 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.4e-12 | 22 | 73 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h + Er RR+ +N+ ++ Lr ++P+ ++ + a+i +++Y+k+L+ Spipo1G0077400 22 QRMTHIALERSRRKLMNEHLSSLRHIVPPH---FIRRGDQASIIGGTIKYVKQLE 73 79***************************9...9*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.94E-7 | 20 | 70 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.7E-13 | 20 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.002 | 21 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-15 | 21 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-9 | 22 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.5E-11 | 27 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MGKRKRKRSQ PPTKNVKEVE NQRMTHIALE RSRRKLMNEH LSSLRHIVPP HFIRRGDQAS 60 IIGGTIKYVK QLEQLLQSLL VKRGERDRRH TYFSCTSPLT SIYRFREFFP SPQYTLHTSQ 120 SPTIMEANVA ATVVQSHVNL TVLSRQKPGQ LLRAISELEN LHLSVLHINV TSLDSSVLYS 180 LNLKVPPV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006829211.1 | 2e-54 | transcription factor bHLH94 isoform X1 | ||||
Refseq | XP_020532222.1 | 1e-54 | transcription factor bHLH94 isoform X3 | ||||
Refseq | XP_020532223.1 | 2e-54 | transcription factor bHLH94 isoform X4 | ||||
Refseq | XP_020532224.1 | 1e-54 | transcription factor bHLH94 isoform X5 | ||||
TrEMBL | A0A3S3N9A7 | 8e-55 | A0A3S3N9A7_9MAGN; Transcription factor bHLH67 isoform X1 | ||||
STRING | ERM96627 | 7e-54 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo1G0077400 |