PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0063600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 528aa    MW: 56493.2 Da    PI: 9.8907
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0063600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-05252274223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg +F+  ++L++H+   H
  Spipo1G0063600 252 SCPECGDVFTKAESLETHQAIrH 274
                     6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.723251279IPR007087Zinc finger, C2H2
PROSITE patternPS000280253274IPR007087Zinc finger, C2H2
SuperFamilySSF563999.59E-19276323No hitNo description
Gene3DG3DSA:3.90.228.108.6E-11278524IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563999.59E-19356524No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MVRRTSMREI ETGRQTDGDR ETERNGEKER RRGLSTSCST ARTGATPSSS YHESQSDKLS  60
LSRTRSSTSN ARGHRQNSHQ QQRQLQQKQH RKKKKQQQPS PPPKPPSSWE QLKSLLTCRI  120
VGLTQVHDPS SAAAAGGTAK NGSKYAKLGS SCTSICTFKD VVHCNTRDIH HRGDHDAFPD  180
SCSTASGALG SEIGLLAAPS SSRRKSLSGS GAYSTAISSS RGGLQLRKLS GCYECHAISE  240
PRRYPTPRTI SSCPECGDVF TKAESLETHQ AIRHAVSELG PEDSGRNIVE IIFKSSWLKK  300
DQPLCKIERI LKVHNTQRTI TRFEDYRDSV KARAAAAFLQ HNAATARHGG AGKKNPRCAA  360
DGNELLRFHC SGLTCSLGAR GSTSLCSSSS LSSPTPCGVC TIIRHGFARA HHEPGKGVRT  420
TASSGRAHDC CPRASGHEPD GGLGRRAMLV CRVIAGRVRP MGDPAAPPPP EETGSSSSAA  480
FDSTATVQHG YSEGAAAGGA CPSLEELFVS TPRAILPCFV VIYRVTA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276294.11e-147PREDICTED: uncharacterized protein LOC100250572
TrEMBLA0A1D1XSH21e-175A0A1D1XSH2_9ARAE; Uncharacterized protein
STRINGVIT_18s0001g14130.t011e-147(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-115C2H2-like zinc finger protein