PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0063400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WOX
Protein Properties Length: 289aa    MW: 31584.9 Da    PI: 7.6251
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0063400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-193898357
                    --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+ +t++q+++L +l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  Spipo1G0063400 38 SRWIPTTDQIRILRDLYYNcgVRSPSAEQIQRISARLrqfgKIEGKNVFYWFQNHKARERQ 98
                    8*****************8779*************************************97 PP
2Wus_type_Homeobox1101.4e-3536100265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW Pt++Qi+iL++ly+ +G+r+P++e+iqri+a+L+++Gkie+kNVfyWFQN+kaRerqk+
     Spipo1G0063400  36 SSSRWIPTTDQIRILRDLYYnCGVRSPSAEQIQRISARLRQFGKIEGKNVFYWFQNHKARERQKK 100
                        789***************9769*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-1130103IPR009057Homeodomain-like
PROSITE profilePS5007110.2033399IPR001356Homeobox domain
SMARTSM003894.5E-535103IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-63898IPR009057Homeodomain-like
PfamPF000461.2E-163898IPR001356Homeobox domain
CDDcd000866.36E-739100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEPQSYQQPQ EDASGGAVGS GGAGGASKSS FLCRQSSSRW IPTTDQIRIL RDLYYNCGVR  60
SPSAEQIQRI SARLRQFGKI EGKNVFYWFQ NHKARERQKK RLTVDVTSNK YNSPSSVISP  120
GVPTACTSPG LYFGQVSGNG CGGSPSIERS YLEYSLPGGL AGGSPVEGSV GWMGVEPAAT  180
PPLYYHHQRP SYYYEQETHY HRAQHQRGGE AAPPPPHIET LPLFPVRSEE DILGSGYVPI  240
RGHFSPAYLD QSQSEEEEGR RHYRVYGGDG ASLELSLYSF GPLPTTSS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008810267.12e-58protein WUSCHEL-like
TrEMBLA0A1D1Z4I61e-104A0A1D1Z4I6_9ARAE; Protein WUSCHEL (Fragment)
STRINGXP_008810267.19e-58(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-39WOX family protein