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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Spipo1G0056700 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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| Family |
C2H2 |
| Protein Properties |
Length: 289aa MW: 31016.7 Da PI: 7.5222 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Spipo1G0056700 | genome | MIPS/IBIS | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12 | 0.00066 | 175 | 197 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC+ C+k+F +++ L H H
Spipo1G0056700 175 FKCSSCDKVFDSPHGLGGHRAGH 197
89***********9998887655 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50157 | 9.452 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0076 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 3.83E-9 | 85 | 106 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 3.2E-7 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 4.9E-4 | 86 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 3.83E-9 | 170 | 197 | No hit | No description |
| SuperFamily | SSF57667 | 4.6E-5 | 173 | 243 | No hit | No description |
| Pfam | PF13912 | 6.4E-5 | 174 | 197 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 1.4 | 175 | 197 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.162 | 175 | 202 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 177 | 197 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 6.1E-4 | 218 | 236 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.82 | 218 | 240 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 220 | 240 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MTLSTNAPRP AATDLPSSAR PSATVSAGAD ERGGVPHRSY HRAEIEQLEA VAQPGSPKPP 60
TVAAPGRRKR MRRSEREEAK KITQPCSECG KRFWSWKALF GHMRCHPNRS WRGIEPPPYV 120
RRRTSPLLPA DLPPGDGQPE EAELEAAYCL ILLTGQQADG DTGHDLPPSS AIKVFKCSSC 180
DKVFDSPHGL GGHRAGHARA MRDVTTRKRK AESSEHLHSC GFCSMSFPSG QALGGHVLVH 240
CDEECEPEKA ASEAGAESSS TAGNGGCGFD LNLPAPEEMM QVKHPNSE*
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