PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo19G0027500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family LBD
Protein Properties Length: 288aa    MW: 30777 Da    PI: 8.3794
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo19G0027500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.22.6e-284107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C +dC ++p++     p++q++++ ++ k++G++ +++l+++  e+ r+++++sl+yeA+ r+ +Pv G+vg++++++++l+q
  Spipo19G0027500   4 SCNGCRVLRKGCGDDCSIRPCLqwikcPESQANATIFLSKFYGRAGLINLINSGAEDLRPAIFRSLLYEACGRMVNPVFGSVGLLWSGSWHLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallke 99 
                      +++e++l ++
  Spipo19G0027500  98 AAVEAVLKGA 107
                      ****998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3133109IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCGDDCS IRPCLQWIKC PESQANATIF LSKFYGRAGL INLINSGAED  60
LRPAIFRSLL YEACGRMVNP VFGSVGLLWS GSWHLCQAAV EAVLKGAPII RVSSEAGGPK  120
LAGSPHEAAT PFYDIRHVSK EATASRLFPQ DAAACSADFY LRKVNRAART QFKRSGGNSG  180
KHSNGDASAF LDFAEVGHTD SPPLSCFFKS LQSSPVSVQS GLSRESSPSQ ASVETENTSM  240
VTTHGADLLK DNGRPADDCK LELELTLGMK PASCRHTIRP LHGSCPP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568012.18e-82LOB domain-containing protein 41
TrEMBLA0A200Q3F64e-81A0A200Q3F6_9MAGN; Uncharacterized protein
STRINGXP_010103788.13e-80(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-74LOB domain-containing protein 41