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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo18G0034900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | bHLH | ||||||||
Protein Properties | Length: 272aa MW: 29630.8 Da PI: 5.7099 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.5 | 3.6e-06 | 173 | 214 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR++iN+++ L++l+P + + k + +Le+ ++Y++sLq Spipo18G0034900 173 QVRREKINEKMRLLQTLVPGC---Y-KAMGTTVMLEEIINYVRSLQ 214 57******************9...3.44888899**********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.80E-9 | 149 | 218 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-13 | 153 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.087 | 163 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-5 | 169 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.5E-12 | 170 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MARHMSMVMA ELAEDFGSFR TLATLMGMDP SFDLIDDFST AIKDPSFHLR SFSDNSFSLP 60 QQLQQFSAPH AETVPWCPPA GCPPGVGLLA DSVVGKEETI SSDGGAVPPS NDRGGEIEAE 120 RKTGPRRGKR RQSWGEEKPA GVVHVRAKRG QATDRHSLAE RKTAQSLGSL TTQVRREKIN 180 EKMRLLQTLV PGCYKAMGTT VMLEEIINYV RSLQNQVEFL SMKLSAAAAF CDLTPSEVDL 240 AAAVMSRLPP LVGDGADCQI QEMDGLMIRE Y* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D1YY37 | 4e-49 | A0A1D1YY37_9ARAE; Transcription factor BEE 1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25330.1 | 5e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo18G0034900 |