 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Spipo16G0056400 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
| Family |
Whirly |
| Protein Properties |
Length: 136aa MW: 15057.4 Da PI: 9.8732 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Spipo16G0056400 | genome | MIPS/IBIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 146.1 | 1.3e-45 | 22 | 131 | 1 | 110 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94
s++k+kaal v +v+p+f+ +dsgn ++k++G++ll++++a+++rkyd ek+q fals+tev+ l++l+++esceffhdp++k+s+eG+v+k+l
Spipo16G0056400 22 SIFKGKAALIVSPVLPKFSMMDSGNSVVKKKGSVLLKFMPAVGTRKYDPEKRQLFALSPTEVGCLISLGPEESCEFFHDPSMKSSQEGEVKKSL 115
79******************************************************************************************** PP
Whirly 95 kvePlpdGsGlfvnls 110
v P ++ G+f+ ls
Spipo16G0056400 116 TVSPTSNDGGYFFTLS 131
*************998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 136 aa
Download sequence Send
to blast |
VSEWIFNLGA QSRWRRTFAD FSIFKGKAAL IVSPVLPKFS MMDSGNSVVK KKGSVLLKFM 60
PAVGTRKYDP EKRQLFALSP TEVGCLISLG PEESCEFFHD PSMKSSQEGE VKKSLTVSPT 120
SNDGGYFFTL SKHPIS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4kop_A | 8e-48 | 16 | 131 | 10 | 125 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_B | 8e-48 | 16 | 131 | 10 | 125 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_C | 8e-48 | 16 | 131 | 10 | 125 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_D | 8e-48 | 16 | 131 | 10 | 125 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. |
